Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0371 ATGATTGGCCCCTTGCCCACGCTTTGCCGTTGCCGTAACCAAGTCGTTCACCTAGTTTTCTTTAAAAAGGAGGCTCATGCCCCTTCTTTCTTCGCATTTCAATTTCCTCTCCGTTTCTTCTCTGAGAAAGGCTACCAAAACTCCTTCAAGATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGAGCTCCGACACGATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCAGCAGAGGCTGATTTTCGCCGGAAAGCAGCTTGAGGACGGACGCACCCTTGCCGACTACAACATCCAAAAGGAATCCACCCTCCACCTCGTTCTCCGTCTCCGTGGTGGCATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCTTGGAGGTCGAGAGCTCTGACACCATCGACAACGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTTGCCGACTACAACATCCAAAAAGAATCCACCCTCCACCTTGTCCTCCGTCTCCGTGGTGGTATGCAAATCTTCGTTAAGACCCTCACAGGTAAGACCATCACCTTGGAGGTGGAGAGCTCAGACACCATTGACAACGTGAAGGCCAAAATCCAAGACAAGGAGGGGATCCCACCAGATCAACAGAGGCTCATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACTTTGGCTGATTATAACATCCAAAAGGAGTCAACCCTCCACCTTGTCTTGCGTCTCCGTGGTGGTATGCAGATTTTCGTTAAGACCCTTACAGGGAAGACCATCACTCTGGAGGTTGAGAGCTCAGACACCATTGACAACGTGAAGGCCAAGATTCAAGATAAGGAGGGTATCCCACCAGACCAGCAGAGATTGATTTTCGCTGGAAAGCAGCTCGAAGATGGACGCACACTTGCAGACTACAACATTCAGAAGGAATCCACCCTTCACCTGGTCCTTCGTCTCAGAGGAGGCATGCAGATTTTTGTCAAGACCTTGACTGGCAAAACCATCACTTTGGAGGTGGAGAGCTCGGACACTATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGGATCCCACCAGACCAGCAGAGGCTTATCTTTGCAGGGAAGCAGCTTGAAGATGGAAGGACCCTTGCTGATTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTGCTTCGTCTCCGTGGTGGTAACTGA 1296 0.5147 MIGPLPTLCRCRNQVVHLVFFKKEAHAPSFFAFQFPLRFFSEKGYQNSFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGN 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0371 431 CDD Ubl_ubiquitin 127 202 - -
Lele47g0371 431 FunFam Polyubiquitin 3 279 354 - -
Lele47g0371 431 Gene3D - 279 354 - -
Lele47g0371 431 Gene3D - 355 431 - -
Lele47g0371 431 Gene3D - 128 202 - -
Lele47g0371 431 Gene3D - 44 127 - -
Lele47g0371 431 Gene3D - 203 278 - -
Lele47g0371 431 ProSitePatterns Ubiquitin domain signature. 229 254 IPR019954 -
Lele47g0371 431 SUPERFAMILY Ubiquitin-like 50 126 IPR029071 -
Lele47g0371 431 ProSitePatterns Ubiquitin domain signature. 381 406 IPR019954 -
Lele47g0371 431 SUPERFAMILY Ubiquitin-like 202 278 IPR029071 -
Lele47g0371 431 CDD Ubl_ubiquitin 279 354 - -
Lele47g0371 431 ProSiteProfiles Ubiquitin domain profile. 51 126 IPR000626 GO:0005515
Lele47g0371 431 ProSiteProfiles Ubiquitin domain profile. 127 202 IPR000626 GO:0005515
Lele47g0371 431 SMART ubq_7 51 122 IPR000626 GO:0005515
Lele47g0371 431 SMART ubq_7 127 198 IPR000626 GO:0005515
Lele47g0371 431 SMART ubq_7 203 274 IPR000626 GO:0005515
Lele47g0371 431 SMART ubq_7 279 350 IPR000626 GO:0005515
Lele47g0371 431 SMART ubq_7 355 426 IPR000626 GO:0005515
Lele47g0371 431 CDD Ubl_ubiquitin 355 430 - -
Lele47g0371 431 FunFam Polyubiquitin 3 203 278 - -
Lele47g0371 431 ProSiteProfiles Ubiquitin domain profile. 203 278 IPR000626 GO:0005515
Lele47g0371 431 Pfam Ubiquitin family 129 200 IPR000626 GO:0005515
Lele47g0371 431 Pfam Ubiquitin family 281 352 IPR000626 GO:0005515
Lele47g0371 431 Pfam Ubiquitin family 357 428 IPR000626 GO:0005515
Lele47g0371 431 Pfam Ubiquitin family 53 124 IPR000626 GO:0005515
Lele47g0371 431 Pfam Ubiquitin family 205 276 IPR000626 GO:0005515
Lele47g0371 431 ProSiteProfiles Ubiquitin domain profile. 279 354 IPR000626 GO:0005515
Lele47g0371 431 ProSiteProfiles Ubiquitin domain profile. 355 430 IPR000626 GO:0005515
Lele47g0371 431 SUPERFAMILY Ubiquitin-like 126 202 IPR029071 -
Lele47g0371 431 ProSitePatterns Ubiquitin domain signature. 153 178 IPR019954 -
Lele47g0371 431 FunFam Polyubiquitin 3 51 126 - -
Lele47g0371 431 ProSitePatterns Ubiquitin domain signature. 305 330 IPR019954 -
Lele47g0371 431 CDD Ubl_ubiquitin 51 126 - -
Lele47g0371 431 PANTHER UBIQUITIN 203 280 - -
Lele47g0371 431 SUPERFAMILY Ubiquitin-like 277 354 IPR029071 -
Lele47g0371 431 CDD Ubl_ubiquitin 203 278 - -
Lele47g0371 431 ProSitePatterns Ubiquitin domain signature. 77 102 IPR019954 -
Lele47g0371 431 FunFam Polyubiquitin 3 127 202 - -
Lele47g0371 431 PRINTS Ubiquitin signature 82 102 IPR019956 -
Lele47g0371 431 PRINTS Ubiquitin signature 103 124 IPR019956 -
Lele47g0371 431 PRINTS Ubiquitin signature 61 81 IPR019956 -
Lele47g0371 431 SUPERFAMILY Ubiquitin-like 354 430 IPR029071 -
Lele47g0371 431 FunFam Polyubiquitin 3 355 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0371 Lele-ChrLele47 2711128 2713140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0371 355 430 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 9.43e-47 155