Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0356 ATGTTGCTTTCTTTTTTGACTTCAGGCATGAAGAGAAAGTCCAGTTCGGGTCGCCAAAAGATCCCTATTGAGAAAATACCAAAGAAAAGCCATCTTCAAGTCACATTCTCTAAGCGTCGCTCAGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACACTCTGTGGTGTAGAAATCGCCATCATCGTCTTCTCTCCGGCGGACAAGGCCTTCTCCTTTGGGCACCCGGAGGTGGAATCCATCATCGATCGCTATATCACCCGAAACCCTCCGTCGGAATCCAGCTCTCACCCTGTGGTGGAGGCGCACCGGAACGCGAACGTCCGGGAGCTGAACATGCAGCTAACACAGGTTCTTGGGCAGCTGGACATGGAGAGAAAACGAGGAGAAGAGCTGGACCAGGTGAGGAAGGCGAGGCAGAGACAGTTCTGGTGGGAGAACCCTATTGAAGAATTAGGGTTTAATGAGTTGCAGCAAGTTCTGGTTTCAACGGAGGAACTGAAGAAGGAGTTAGGGAAGATGGCGAGCAAGATGTTGATGATGGAGCATAATAATAGTTCGGCTGCTACTGATCATTCATCAGTGATTATAGGAGAAGGACAACAACATGGTGGTGGACTTGGACTCTATAATAATAATAACTATGTTTTCGAGAATAAACATGTTGTTATGAACAACATTAATGCTGCTTCTTCGTTGTCCAGTAATATTCTTCCTGCTCAACATGCCTATAACAATCTCAATTGTAAGCATGGATATCTATGA 762 0.4633 MLLSFLTSGMKRKSSSGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPEVESIIDRYITRNPPSESSSHPVVEAHRNANVRELNMQLTQVLGQLDMERKRGEELDQVRKARQRQFWWENPIEELGFNELQQVLVSTEELKKELGKMASKMLMMEHNNSSAATDHSSVIIGEGQQHGGGLGLYNNNNYVFENKHVVMNNINAASSLSSNILPAQHAYNNLNCKHGYL 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0356 253 FunFam Agamous-like MADS-box protein AGL62 28 94 - -
Lele47g0356 253 Gene3D - 94 193 - -
Lele47g0356 253 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Lele47g0356 253 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Lele47g0356 253 SUPERFAMILY SRF-like 17 96 IPR036879 GO:0003677|GO:0046983
Lele47g0356 253 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Lele47g0356 253 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Lele47g0356 253 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Lele47g0356 253 PANTHER MADS BOX PROTEIN 18 171 - -
Lele47g0356 253 CDD MADS_MEF2_like 17 84 IPR033896 GO:0000977|GO:0045944
Lele47g0356 253 Gene3D - 29 93 IPR036879 GO:0003677|GO:0046983
Lele47g0356 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0356 Lele-ChrLele47 2592461 2593222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0356 13 209 Type I MADS-box Gene Family AT5G60440 46.040 1.70e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele47g0356 SRF-TF 3.4e-23 No_clan