Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0304 ATGGCTTTGGAGGCTCTGAATTCTCCTTCCGCTAATCCCAATCCTGTGTTCAAAGAAGATGATGATCTTCAGTCGCTGGACGCTTGGACCAAGGGCAAGCGATCTAAACGTCACCGTTTTGATCAGAATCCGCCTTCTGCTGAGGAAGAGTATCTCGCTATCTGTCTCCTCATGCTCGCCCACGGTGGCGGCAACGCTAATCCCAATACGACGTCGTCGTCTTCCCCTGATCCGACGAAGCTTTCTCATAAGTGCTCTGTCTGTAACAAGTCCTTCTCCTCCTACCAAGCGCTCGGAGGACACAAGGCCAGCCACCGTAAGTCCTCCTCCTCCGCCTCCGATCATCACCCTCCCGCCGATAATTCATCCGCCTCCATCTCCACCGCTGCAGTAGCTGGCACCGGGAAGCGGCATCAGTGTTCCATCTGTTACAAGTCTTTCCCGACCGGTCAGGCACTCGGCGGTCACAAGCGCTGCCACTATGACGGCGGAAACGCCAACAACAGCGGTACCGGTGGGACCACGGTGATCACATCGTCTGAGGGGAACACCTCATCGGTCACGCACACCAACCGCGGCTTTGACCTGAACCTCCCCGCGCCTTTGACCGACTTCTCCCCGGCTGGGTTCATCGGCGCCGCCTCCAAGAGTGTCAAGATCGGAGAAGAAGAGGTGGAGAGCCCGTTACCGACGGCCGTCACCAAGAAGCCTCGTCTGTTCATGGACGGAGAATGA 735 0.5728 MALEALNSPSANPNPVFKEDDDLQSLDAWTKGKRSKRHRFDQNPPSAEEEYLAICLLMLAHGGGNANPNTTSSSSPDPTKLSHKCSVCNKSFSSYQALGGHKASHRKSSSSASDHHPPADNSSASISTAAVAGTGKRHQCSICYKSFPTGQALGGHKRCHYDGGNANNSGTGGTTVITSSEGNTSSVTHTNRGFDLNLPAPLTDFSPAGFIGAASKSVKIGEEEVESPLPTAVTKKPRLFMDGE 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0304 244 MobiDBLite consensus disorder prediction 1 45 - -
Lele47g0304 244 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Lele47g0304 244 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Lele47g0304 244 SUPERFAMILY beta-beta-alpha zinc fingers 83 160 IPR036236 -
Lele47g0304 244 Gene3D Classic Zinc Finger 81 160 - -
Lele47g0304 244 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 35 200 IPR044653 GO:0003700
Lele47g0304 244 SMART c2h2final6 83 105 IPR013087 -
Lele47g0304 244 SMART c2h2final6 138 160 IPR013087 -
Lele47g0304 244 Pfam C2H2-type zinc finger 137 162 - -
Lele47g0304 244 Pfam C2H2-type zinc finger 83 107 - -
Lele47g0304 244 MobiDBLite consensus disorder prediction 99 126 - -
Lele47g0304 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 160 IPR013087 -
Lele47g0304 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0304 Lele-ChrLele47 2179752 2180486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0304 1 239 C2H2 Transcription Factor Family AT1G27730 48.606 3.26e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele47g0304 zf-C2H2_6 1e-11 CL0361