LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele47g0296	ATGATGCTACGCGCTCCGTCCTCAAACGTCAGGGACAGTGTCACGGAGCTCCGTGATCTTTCCGCCTATAACTCACCAAGAGGCCAGAGCAGTGCGTATGCTGATGCAATGAGTAAAAATATAGTTGATGCTTTGCATGAAGTGCATCACACAGGTGGTGATCTTGTTGTTGTTAACCCTAAAAAGGATGTTCTGTTGTATGAAGGGGACAGAGATTTTGAGCCACACAAAGGCATTGAATTTGATTCTCATGAAGCAGCATATTCATTTTATCAAGAATATGCCAAATCTATGGGATTCACCACTTCGATAAAAAACAGCAGACGTTCAAAGAAAACCAAAGAATTTATTGATGCCAAATTCGCGTGCTCTAGATATGGATTTACTCCCGAGTCAGATAGTGGGAGTAGTCGAAGGCCAAGTGTAAAGAAGACAGATTGCAAAGCCTGCATGCATGTGAAGAGAAGGTCAGATGGAAAGTGGATAATTCATGAATTCATAAAGGAGCATAATCATGAACTTCTACCAGCTTTGGCGTATCATTTTCGGATTCATAGAAATGTGAAGTTAGCTGAAAAGAATAACATTGATATATTGCATGCTGTCAGTGAACGCACCAGAAAGATGTATGTTGAAATGTCTAAGCAATCTAGTGGCTGTCATAATTTTGGGTCTCTTCTCAGTGATGTAAATTATCAGTTTGAAAGAGGCCAACATTATTTGGCTTTGGACGAGGGAGATGCTCGAGTTATTCTTGAGTATTTTAAGCATATCCAAAAGGAGAATCCTAACTTCTTTTATGCTATTGATTTGAATGAAGAACAACGATTGAGGAATTTGTTTTGGGTTGATGCAAAAAGTAGGAGTGATTATGTCAGCTTTAATGATGTAGTTTCATTTGATACTTCTTACATCAAAAGCAATGACAAGTTACCATTTGCTCCTTTTGTTGGAGTGAACCATCACTGTCAACCCATATTGCTTGGATGCGCGTTGGTTGCTGATGAGACGAAACCAACTTTTGTTTGGGTGATGAAGACATGGCTTAGAGCAATGGGCGGGCAAGCTCCTAATGTCATAATCACTGATCAAGACAAAGCCTTGAAGGCAGCAGTTGAAGGAGTCTTCCCAAATGCACGCCATTGCTTTTCTCTTTGGCATGTACTTGATAGGATTCCGGAAAATCTTTCTATGGTGATAAAAAGGTATAAGAATTTCTTGCCGAAGTTTGACAAGTGCATATTTAAGTCTTGGACAGATGAGGAGTTTGACATGAGGTGGTGGAAAATGGTCACTAGATTTGAACTTCAGGATGATGTATGGTTTCAGTCATTGTATGAAGACCGGAAAAAGTGGGTGCCCACTTATATAGGCGATACCTTTTTAGCTGGAATGTCTACTGCTCAACGTTCTGAAAGTATGAACTCTTTCTTTGACAAATACATTCATAAAAAAATTACTGTTAAAGAGTTTGTGAAACAGTATGGGACAATTCTTCAGAATAGGTATGAAGAGGAAGCTCATGCAGATTTTGATACATTGCACAAACAGCCAGCACTCAAGTCTCCTTCTCCTTGGGAAAAACAAATGTCAACAATTTATACGCACGCGATTTTCAAGAAATTCCAAGTTGAAGTTTTGGGTGTCGTTGGCTGTCATCCTAGGAGAGAAGGTGGAGATGGAAGCATAGCAAAATTTGTAGTTCAAGATTGTGAGAAGGAGGAAGAGTTTTTGGTCACTTGGAATGAGATGAACTCAGAGGTTTCATGCTTCTGTCGATTATTTGAATATAAAGGTTTCCTTTGCAGGCATGCATTGAATGTTCTCCAACTTTGTGGCTGTTCAAGTATCCCATCTCACTACATTTTAAAAAGGTGGACCAAAGACGCGAAAAGTAGGGTATCAATAAGGGAAGGAACTGAAAGGATCCAAACTAGGGTGCAACGTTATAACGACTTGTGTAAAAAAGCTATTGAATTGAGTGAGGAAGGATCCTTATCTGAAGAGAGTTATGATGTTGTTTTCCGTGCACTTGTTGATGCGCTGAAGAATTGTGTACACGTGAATAATTCTAACAACAATAATGCAGAAACCAGCAACAATTCTCTTGCCCTTCGTGAAGCCGAAGCAAATCAGGTTAACATTACTACAAAAACAACTAAAAAGAGGACCCCTGCTAAGAGAAGAAAGGTACAACATGTAGATACCGATATGATACTTGTCGATGCACAAGACAGCTTGCAACAAATGGATAACCTTAGCTCGGGTGGAATGACCCTTAATGGATATTATGGTGCCCAGCAAAATGTGCAAGGACTGGTACAGTTGAACTTAATGGAGCCTCCTCATGATGGTTACTATGTTAATCAACAGAGTATGCAGGGCCTTGGCCAACTGAATTCTATGACCCCTAGCCACGACGGGTTTTTCGGGACACAGCAAAGCATTCATGGGCTGGGGCCATTGGAGTTTCGTCCACCGACCACTTTTGGATATACCCTGCAGGATGAGCCTGATCTGAGGCCTGCTCAGTTTCATGGCAGCAGTTCAAGAAATACATAG	2562	0.4063	MMLRAPSSNVRDSVTELRDLSAYNSPRGQSSAYADAMSKNIVDALHEVHHTGGDLVVVNPKKDVLLYEGDRDFEPHKGIEFDSHEAAYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGFTPESDSGSSRRPSVKKTDCKACMHVKRRSDGKWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRKMYVEMSKQSSGCHNFGSLLSDVNYQFERGQHYLALDEGDARVILEYFKHIQKENPNFFYAIDLNEEQRLRNLFWVDAKSRSDYVSFNDVVSFDTSYIKSNDKLPFAPFVGVNHHCQPILLGCALVADETKPTFVWVMKTWLRAMGGQAPNVIITDQDKALKAAVEGVFPNARHCFSLWHVLDRIPENLSMVIKRYKNFLPKFDKCIFKSWTDEEFDMRWWKMVTRFELQDDVWFQSLYEDRKKWVPTYIGDTFLAGMSTAQRSESMNSFFDKYIHKKITVKEFVKQYGTILQNRYEEEAHADFDTLHKQPALKSPSPWEKQMSTIYTHAIFKKFQVEVLGVVGCHPRREGGDGSIAKFVVQDCEKEEEFLVTWNEMNSEVSCFCRLFEYKGFLCRHALNVLQLCGCSSIPSHYILKRWTKDAKSRVSIREGTERIQTRVQRYNDLCKKAIELSEEGSLSEESYDVVFRALVDALKNCVHVNNSNNNNAETSNNSLALREAEANQVNITTKTTKKRTPAKRRKVQHVDTDMILVDAQDSLQQMDNLSSGGMTLNGYYGAQQNVQGLVQLNLMEPPHDGYYVNQQSMQGLGQLNSMTPSHDGFFGTQQSIHGLGPLEFRPPTTFGYTLQDEPDLRPAQFHGSSSRNT	853

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele47g0296	853	Pfam	SWIM zinc finger	586	612	IPR007527	GO:0008270
	Lele47g0296	853	SMART	26again6	588	615	IPR006564	GO:0008270
	Lele47g0296	853	Pfam	MULE transposase domain	297	389	IPR018289	-
	Lele47g0296	853	ProSiteProfiles	Zinc finger SWIM-type profile.	577	613	IPR007527	GO:0008270
	Lele47g0296	853	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	69	686	IPR031052	GO:0006355
	Lele47g0296	853	Pfam	FAR1 DNA-binding domain	89	176	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele47g0296	Lele-ChrLele47	2107671	2111968	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Lele47g0296		MULE	3.4e-23	CL0219