Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0294 ATGACGAGTGCTTCGGAGCTATTCTACAATCGGAGGTATCGTTTGGGAAGAACCTCTGATTATCTGGGGAACGATTCGTTGCCCGATAGATTCCTTCAATCCGATATCAATAACCGTCGCCATCATCACCATCTACATGATTTGAGCGATGGTGACACTCTCCGACGGTCCACGCCAACGCGCCGGTTATTTCATCGTTTGTCCTCCACGGAGCGAGAGTCAGCTAGACTTGACCCAAGGCATAACCGGTCTCTTTCAAACACGGCAAGTTCTGCTGAAAATGTTAGCAGTTTCAGGGGCCCTAGAGTGACTGGCAATGACAGGCTACCCATAGCTGTGGTACATGCAAGGGCAAGACTCCTTCAGAGGTTGAGTGCAGAACCTCCCTCTAGAAACAGGCAAAGGGGTAGAGTTTTTCTAGATATTGATGACACGAGGCATGCTAACTCAAGGGATGAAGAGAGCAGTGAATCATCAACTACTGGTTTAGCTGAGGGTTTGCCATTAACTGACTTAACTTTACAAATGGGAAGGTTCCAACTCTCACATGAAGTGAACAAAAAACCACCTGGACTCAACCAGGAGGCCATGGACCGTTTGCATATGGAAATCTTTGGCATCAGGGAAACACAAATGGAGGAATTGGAATCCAGAGTACTGCAGGATTGTGGCATATGCCTAGAAACTTTTCTGGAAGGAGATAAGCTGATACGCTTGCCATGTGGGCACAGATTCCACTATGTGTGTTTGAATCCATGGGTTAGAAGATGTGGGGATTGCCCATTTTGTAGAAGAGGTGGAAGCGACTGTCTTCTCTGGCACTCGGACTTGAAGCCGCACGCCTCCGGTGATTTCTCAATCGCCGTCGTTCAAGCCAATTCCAGCCTCGAAGATCAGAGCCAAGTCTTCACGTCTCCCTCCGCCACCTACGTCGGTGTTTACGATGGCCACGGCGGTCCTGAAGCTTCTAGATTTGTTCTTCTTAGCCACTGCATTTCGGAAAATTTTCTCATATTCAAGGGAATTCGTTGTGATTTATGGTTCAGTGAATTTTCCGCTGAAAATGGGGGATTATCAGTGGATGCGATCAAAAAGGCTTTTCATGCAATCGAGGAGGATTTCTTGAGTTTGGTGAAGCAATCGTTGCATACGAGTGCCCGAATTGCTTCCGTAGGATCGTGTTGTCTTCTTGGTGCAATTTCTGATAATGTATTATATGTTGCGAACCTTGGTGATTCAAGAGTAGTTCTTGGCCGGAGAGATTTGGGGGGCGACAAGCATCCGGTGGTGGCGCAACGGTTGTCAACTGATCATAATGTATCTGTTGAGGAGGTGAGGAGAGAGGTCAAATCTCTTCATCCTGATGATGAACACATTGTAGTTTTTACTCGTGGAAGTTGGAGAATTAAAGGCATTATACAGGTGTCAAGATCTATAGGTGATGTGTATCTCAAGAACCCTGATTGTTGTAGCAGCCCTATTCCTTTGAAACGTCCTGTAATGACGGCTGAACCATCAGTTATTGTCAGGGAGCTTGAGTCACAAGATTTGTTTCTGATATTTGCATCAGACGGCCTTTGGGAACAATTAACTGATGACGAAGCAGTTGAGATTGTTTACAAATATCCAAGAGCAGGAATTGCCAGGAGATTGGTGAGAGCTGCACTTGAATCAGCAGCAAAGAAGAGAGAGATGAGATATAAGGACATGAAGAAAATTAACAGGGGAGTAAGAAGACTTTTCCATGATGACATTACTGTTATAGTAGTGTATCTTGATCACCGAAAAGTTAAGAAAAATGCTGTCTGCTCCATAAGTGCTCCTATGGATATTTTCTCCCTAAATTCAGATGAAACAGAACAGAGTATCTTTCGTACAGTTGCCTGA 1887 0.452 MTSASELFYNRRYRLGRTSDYLGNDSLPDRFLQSDINNRRHHHHLHDLSDGDTLRRSTPTRRLFHRLSSTERESARLDPRHNRSLSNTASSAENVSSFRGPRVTGNDRLPIAVVHARARLLQRLSAEPPSRNRQRGRVFLDIDDTRHANSRDEESSESSTTGLAEGLPLTDLTLQMGRFQLSHEVNKKPPGLNQEAMDRLHMEIFGIRETQMEELESRVLQDCGICLETFLEGDKLIRLPCGHRFHYVCLNPWVRRCGDCPFCRRGGSDCLLWHSDLKPHASGDFSIAVVQANSSLEDQSQVFTSPSATYVGVYDGHGGPEASRFVLLSHCISENFLIFKGIRCDLWFSEFSAENGGLSVDAIKKAFHAIEEDFLSLVKQSLHTSARIASVGSCCLLGAISDNVLYVANLGDSRVVLGRRDLGGDKHPVVAQRLSTDHNVSVEEVRREVKSLHPDDEHIVVFTRGSWRIKGIIQVSRSIGDVYLKNPDCCSSPIPLKRPVMTAEPSVIVRELESQDLFLIFASDGLWEQLTDDEAVEIVYKYPRAGIARRLVRAALESAAKKREMRYKDMKKINRGVRRLFHDDITVIVVYLDHRKVKKNAVCSISAPMDIFSLNSDETEQSIFRTVA 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0294 628 CDD RING-H2_PA-TM-RING 222 264 - -
Lele47g0294 628 FunFam Probable protein phosphatase 2C 42 275 600 - -
Lele47g0294 628 SUPERFAMILY PP2C-like 291 594 IPR036457 -
Lele47g0294 628 SUPERFAMILY RING/U-box 222 265 - -
Lele47g0294 628 Pfam Ring finger domain 222 264 IPR001841 -
Lele47g0294 628 MobiDBLite consensus disorder prediction 66 105 - -
Lele47g0294 628 MobiDBLite consensus disorder prediction 134 154 - -
Lele47g0294 628 ProSitePatterns PPM-type phosphatase domain signature. 310 318 IPR000222 GO:0043169
Lele47g0294 628 Pfam Protein phosphatase 2C 306 561 IPR001932 -
Lele47g0294 628 SMART ring_2 223 263 IPR001841 -
Lele47g0294 628 MobiDBLite consensus disorder prediction 66 80 - -
Lele47g0294 628 CDD PP2Cc 291 592 IPR001932 -
Lele47g0294 628 Gene3D - 275 602 IPR036457 -
Lele47g0294 628 MobiDBLite consensus disorder prediction 125 167 - -
Lele47g0294 628 ProSiteProfiles PPM-type phosphatase domain profile. 284 592 IPR001932 -
Lele47g0294 628 SMART PP2C_4 274 590 IPR001932 -
Lele47g0294 628 MobiDBLite consensus disorder prediction 81 101 - -
Lele47g0294 628 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 267 IPR013083 -
Lele47g0294 628 PANTHER PROTEIN PHOSPHATASE 202 591 - -
Lele47g0294 628 ProSiteProfiles Zinc finger RING-type profile. 223 264 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0294 Lele-ChrLele47 2090600 2096824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0294 266 608 PP2C-type Phosphatase Gene Family AT3G51370 51.532 9.79e-122 364