Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0244 ATGAACCAGAAATCATGGCTTTGGAAGAAAAGATCTATGGAGAAGACAATCTTTACAGTGGACAGAGTTGCAAATTCTTCAAGGACCATAAAAGCAGAGGTACAAGATTTTCCTACTGGCAAAAATGCTGACGTGGAGAGATCATCAAAAACTCTGAATGAGAAGTTGGCATCAGTCATCCTTGACTCTCATGAAGCAGAGGGTTTTCCTCCAAAACATGAACAGATGTCCCAACGCAAAATTAGAGACAAAGCAACAGAATTAGAGTCCTGTAAAAAGGAAGCAGACGAAGATTTGATTAAAGAAACATCAGCTGAAAGCATGTCTGGTGCTGTACCAGATTTATTGAAAGAGCATGAGAAGATTCAGAAAGAGTTGGAAGAAAAGTTGCAGGAAAATTGTAAAATGCTAGCTGACTTAACCGTCGAGAATGCGAATCTAACTAATTCTCTTCTAGCCAAAGAGAAATCTATTGGAGACCTTCTAAATCGTAAACGTCAGATTGATGCAGAATACAGTACACTAGTTGATAGATTAGATTCCACGGTGAAGGAAAATGCTTTCATCAAATATGAATTTCACATGCTCGAGAAGGAATTCGAGATTCGAAAAGAAGAAATGGAATATAGTCGTCAGTATGCAGAAGCTTCTCATAAACAATATCAAGAAACCATTCAGAAAGTCTCCAAGTTAGAAGTTGAGTGTCAGAGGCTCCGTCATCTTCTGCAGAAAAGGTCACTGGCGAATTCGAAGAATGAAGTTGGAAGAAGAATAATAACTCCTAACAGAGATTTGATTTACAACAAAACTGCTAGAGGAAACTCTCCTGAGGTATCTAACAAGAGCATCGGCTTGATGATCAAACGTTTGCAGGATCTGGATGAGGAAAACAAGGCTCTCAAAAGGATTCTGACAAAGAAGAACTCTGAACTGGAATCTTCAAGAAATATGTATGCTCAAACAGCTACCAGATTATCACAGGCTGAGATTCTACTCAGAAAGCTATCTCAAGATCACAAGAAGTCCATGGGGCCATCAAAGTGTTATTATCCTGTATCTAATGAGCTTTCTGTTATATCAAAGTTTGATATTGCTAGTGATGATGATGGGGTTAGCTCTTCAGGATCCTGGGCAAATGCACTTATTTCTGAACTGGAACATTTGAGAACTGGAGAGACTAATTTAGATCGGAAGAACTGTAAAGCCATTGAAGTTTCAGATATGAATTTGCTCGATGATCTTACCGAGATGGAGAAGCGAGCTATAGTTTCAGTTGATACACCTAAAACAGAATATTGCTCTGATTTAACTAGCAGAGAACTAGTGCCACTTGAACAAGAATTTGGCTTCAGATTTGCAACTAATGAGAATTCATTTGACTGGCTTCAGATTGTTTTGAAGGCCACCTTGGAGCAGCAGCGAATATCGAAACGAAGTCTCCATGAACTCTTCGAGGACATAAGAATTGCTTTGGGTTGCATAACTCCCCCAGCCTCCTGTAAATCTAATAGTTTCAACAGTGCTACAGAGGAAAAAAGCAACCAATGCCTCAATTCTACTTCGAGAAATTCAATCAGTAAAATTATCAAGCTGATTGAAGGCATTTCTCCTGTGTCATTGATCAGCAACAATTGCCCAGATGATTGCTTGAAGAACCAGAATTCCATAATACCTCAATCGCCAACCTCCAAAGAATACTTCGTTCACGTTTTCCAGTGGAAGCTTGCTGACTTGAATCCACTTCTCCATCAACTTGTTCTTACCTGTAAGGATTTATTAACCGGAAGAGCTGATCTTGAAGAATTTGCACGGGAAGTAGCATTTGCTTTGGACTGGAGCATAAATAATTGTGTCAGCCCTACAAATTCTTCAGTTGCAAGGGATAAGATCAAGAAGCACTTTAGCTCGGAGGGAATTAGGGTTTTCGGCGACACAACAATGGAGCAATCCCAGAATCAAGCGCTCGAACAAGTTCAGTGCTTCGGCCGCAAGAAGACTGCCGTGGCCGTCACCTACTGCAAGCGTGGTCGTGGTCTCATCAAGATCAATGGTTGTCCAATTGAGTTGGTGCAGCCGGAGATCCTCCGATTCAAGGCATTCGAGCCGATCCTTCTCTTGGGGAGGCATCGATTTGCCGGCGTCGACATGAGAATCCGTGTCAAAGGAGGTGGTCATACCTCGCAGATATACGCAATCAGACAGAGTATTGCCAAGGCCCTGGTCGCGTTTTACCAGAAGTATGTTGACGAGCAGAGCAAGAAGGAGATCAAAGACATCCTTGTTAGGTACGACAGAACTCTGCTGGTTGCTGATCCCAGGCGCTGCGAGCCTAAGAAGTTCGGTGGTCGTGGTGCTCGTGCAAGGTTCCAGAAGTCCTACCGTTGA 2385 0.4205 MNQKSWLWKKRSMEKTIFTVDRVANSSRTIKAEVQDFPTGKNADVERSSKTLNEKLASVILDSHEAEGFPPKHEQMSQRKIRDKATELESCKKEADEDLIKETSAESMSGAVPDLLKEHEKIQKELEEKLQENCKMLADLTVENANLTNSLLAKEKSIGDLLNRKRQIDAEYSTLVDRLDSTVKENAFIKYEFHMLEKEFEIRKEEMEYSRQYAEASHKQYQETIQKVSKLEVECQRLRHLLQKRSLANSKNEVGRRIITPNRDLIYNKTARGNSPEVSNKSIGLMIKRLQDLDEENKALKRILTKKNSELESSRNMYAQTATRLSQAEILLRKLSQDHKKSMGPSKCYYPVSNELSVISKFDIASDDDGVSSSGSWANALISELEHLRTGETNLDRKNCKAIEVSDMNLLDDLTEMEKRAIVSVDTPKTEYCSDLTSRELVPLEQEFGFRFATNENSFDWLQIVLKATLEQQRISKRSLHELFEDIRIALGCITPPASCKSNSFNSATEEKSNQCLNSTSRNSISKIIKLIEGISPVSLISNNCPDDCLKNQNSIIPQSPTSKEYFVHVFQWKLADLNPLLHQLVLTCKDLLTGRADLEEFAREVAFALDWSINNCVSPTNSSVARDKIKKHFSSEGIRVFGDTTMEQSQNQALEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVQPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0244 794 Pfam Ribosomal protein S9/S16 662 794 IPR000754 GO:0003735|GO:0005840|GO:0006412
Lele47g0244 794 ProSitePatterns Ribosomal protein S9 signature. 722 740 IPR020574 GO:0003735|GO:0005840|GO:0006412
Lele47g0244 794 Coils Coil 221 241 - -
Lele47g0244 794 FunFam 40S ribosomal protein S16 650 794 - -
Lele47g0244 794 SUPERFAMILY Ribosomal protein S5 domain 2-like 657 794 IPR020568 -
Lele47g0244 794 Pfam Filament-like plant protein, long coiled-coil 82 657 IPR008587 -
Lele47g0244 794 Coils Coil 112 143 - -
Lele47g0244 794 Coils Coil 290 310 - -
Lele47g0244 794 Gene3D - 648 794 IPR014721 -
Lele47g0244 794 PANTHER RIBOSOMAL PROTEIN S9 645 791 IPR000754 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0244 Lele-ChrLele47 1715704 1723612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0244 654 794 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 90.071 8.64e-87 269