Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele47g0238 | ATGTCTGATCTATCAAATTCAGATAACACTACTGGTGAAATTAGGATGGAGAAATCCTTGAGAGAGAAGAAGAGAGATATTAGCACGGTTGATGGTTTAGAAAATCATCATCGTGAATCTCGTGTCTCAGTAGAGAGAGAAAGAAGGAAGAAGATAAGGCTCTTTATGAGAGAACTTCAAAATTTTGTCCCCTCTCTCCATACTAAGGCAGACCAGGCAACCATTGTTGAAGAAACCATGAAGTACATTAAAACCCTAGAGGAAAATGTTGAAAAGTTGGAAAAACTAAAGAGAGAAGGACTCCAATCTTCCTCCAATTATGCCAATAATCCCACTGAATCTTCTTCCTCCATGGACACTCAAAACCCAATAGGGTTTCAAACTTGGAATTTTCCAAATGTGGTAGTGAGCATTTGTCGAGAGGAAGCTCAGTTTAGTATGTGCTTTCCCAAGAAGGAAGGCCTTTTCAGTGACATTTGCGGTGTTCTTGAGAAGCACAATATTAATGTTTTGTCTGCCAACATCTCATCCGATAATAGGAAAAGCTCGTATATGATTCAAGCACATGCAAATAAACAGAATTCGGATCAAGTTGCAGTGGAGGAAACATTCAAGGAAGCGGCAAGAGAAATACATCTTCTGTCCCCTATATGA | 654 | 0.393 | MSDLSNSDNTTGEIRMEKSLREKKRDISTVDGLENHHRESRVSVERERRKKIRLFMRELQNFVPSLHTKADQATIVEETMKYIKTLEENVEKLEKLKREGLQSSSNYANNPTESSSSMDTQNPIGFQTWNFPNVVVSICREEAQFSMCFPKKEGLFSDICGVLEKHNINVLSANISSDNRKSSYMIQAHANKQNSDQVAVEETFKEAAREIHLLSPI | 217 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele47g0238 | 217 | CDD | bHLH_AtbHLH_like | 41 | 94 | IPR045239 | - | |
| Lele47g0238 | 217 | Pfam | ACT domain | 154 | 205 | IPR002912 | - | |
| Lele47g0238 | 217 | Pfam | Helix-loop-helix DNA-binding domain | 38 | 87 | IPR011598 | GO:0046983 | |
| Lele47g0238 | 217 | ProSiteProfiles | ACT domain profile. | 144 | 217 | IPR002912 | - | |
| Lele47g0238 | 217 | PANTHER | BHLH DOMAIN-CONTAINING PROTEIN | 30 | 214 | IPR044278 | GO:0003700|GO:0006355|GO:0009960 | |
| Lele47g0238 | 217 | Gene3D | - | 31 | 99 | IPR036638 | GO:0046983 | |
| Lele47g0238 | 217 | SUPERFAMILY | ACT-like | 143 | 206 | IPR045865 | - | |
| Lele47g0238 | 217 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
| Lele47g0238 | 217 | MobiDBLite | consensus disorder prediction | 100 | 121 | - | - | |
| Lele47g0238 | 217 | SMART | finulus | 42 | 92 | IPR011598 | GO:0046983 | |
| Lele47g0238 | 217 | MobiDBLite | consensus disorder prediction | 98 | 121 | - | - | |
| Lele47g0238 | 217 | CDD | ACT_UUR-ACR-like | 154 | 178 | - | - | |
| Lele47g0238 | 217 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 35 | 97 | IPR036638 | GO:0046983 | |
| Lele47g0238 | 217 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 36 | 86 | IPR011598 | GO:0046983 | |
| Lele47g0238 | 217 | Coils | Coil | 76 | 103 | - | - | |
| Lele47g0238 | 217 | MobiDBLite | consensus disorder prediction | 14 | 47 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele47g0238 | Lele-ChrLele47 | 1683779 | 1684730 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele47g0238 | 1 | 213 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT1G49770 | 31.058 | 2.59e-31 | 114 |
Transcription factors information