Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0234 ATGATGGACTGGACTGTTTCTGATAGAGCATCAACTATATCTTTTTTGTTTTCATTTTTCTTATTCTTCTGTTCTCGCTTCCTTTGTCCTTGCTTGTACAATGACAAGGCTTATGGCAGAAGCGTCCATGTTTATAACCTTGTCATATTCACAAGGATATCTAAAGATATTTATGGTGAAATTTTGTGTTTGATGATGCCTCTGAAACATTCTATGCAGGAACCTTTGAGAGGTGAAATTATGGAGACCCCGAATAGATCTATATCAACAGGGTCTTCAGATTCATCAGAACAGAAGGACAAAGATATAACTTATTCAAATTCAAATGCTATCCTGCCTCCATGTCCTTTAAACCGGCAGCCTTCTAGTTCCTTGGATGGTCCGGTGGCTATACTTTGGGATATTGAAAATTGTCCTCTTCCGAGTGATGTGCGCCCTGTTGATGTTGCCGGGAATGTAACAATGGCTTTGCGGCTGCATCCAATAATTAAAGGAGCTGTTATGATGTTTTCTGCTTATGGGGATTTCAATAATTTCCCCAGGCGACTCAGAGAGGGTTGCCAAAGAACTGGTGTTAAACTCACTGATGTTCCCAGTGGGAGAAAAAATGCTGCTGATAAGGCTATCTTGGCTGACATGTTCTTGTTTGCACTTGACAACCGACCGCCTTCTTCTATAATGCTGATATCTGGAGACGTTGATTTTGCTCCTGCACTTCATGTTCTCGGTCAACGGGGATATACTATCATTCTTGTCGTCCCTGCTGGGGTGGGTATGTCGACTTCCCTTAGCAGTGCTGGTAAATTTGTCTGGGACTGGCCTAGCATTGCTCGTGGAGAAGGTTTTGTGCCTCCCTCAAAGGCTCTAGTGCCACCTCATGTTGTTCCGACCGAGGCTGTTGCAGATCTGATAGGGTGCCGTATCAATGGCAACTTGGATGGACAAAATGAAGAAGCTATTGTTTATGAAGGGATCTCGCAGAACTCCCATAACTCCAAATGTTGCTCATTTGTATCACAATCTCTGCCTGAATACAAAAGTGATACATCGAATGCATCAAGCTTTCCGACGGCCTTGAGGGCACATAGCCTTCCATCCGCTCTGAACAATGTTTCAGGAGTATCATCTTTGTCTTCTTCTGGTGACCATGGGGATTTGAATGGTGTTAAGTGTCAGCTGGTAAAGTTGCTTGAACTTTCTGGAGGTTGTTTGCTTCTGGCTCATGTTCTACCAGAGTATCAGAAATATTTCGGGAGAGCTGATATTAACACTACAACAAAACTTTGCGGAGCGGAAGAGCAATTTGAAGAGCTGATCGGTGTTTCTCTTGAGCGCGCAACACGGATAAGCTCCATTTTGAAGTAG 1365 0.4344 MMDWTVSDRASTISFLFSFFLFFCSRFLCPCLYNDKAYGRSVHVYNLVIFTRISKDIYGEILCLMMPLKHSMQEPLRGEIMETPNRSISTGSSDSSEQKDKDITYSNSNAILPPCPLNRQPSSSLDGPVAILWDIENCPLPSDVRPVDVAGNVTMALRLHPIIKGAVMMFSAYGDFNNFPRRLREGCQRTGVKLTDVPSGRKNAADKAILADMFLFALDNRPPSSIMLISGDVDFAPALHVLGQRGYTIILVVPAGVGMSTSLSSAGKFVWDWPSIARGEGFVPPSKALVPPHVVPTEAVADLIGCRINGNLDGQNEEAIVYEGISQNSHNSKCCSFVSQSLPEYKSDTSNASSFPTALRAHSLPSALNNVSGVSSLSSSGDHGDLNGVKCQLVKLLELSGGCLLLAHVLPEYQKYFGRADINTTTKLCGAEEQFEELIGVSLERATRISSILK 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0234 454 CDD PIN_limkain_b1_N_like 128 254 - -
Lele47g0234 454 Gene3D - 126 274 - -
Lele47g0234 454 Pfam NYN domain 128 266 IPR021139 GO:0004540
Lele47g0234 454 PANTHER LIMKAIN B LKAP 93 353 IPR024768 GO:0005777|GO:0010468|GO:1903231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0234 Lele-ChrLele47 1651251 1654201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0234 125 279 C2H2 Transcription Factor Family AT5G61190 41.290 2.34e-26 110