Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0218 ATGGACGACTATTTGAGCAGCGATGAAGATTATCATTACTCCGATCAGGGCTCCGTCGAAGGCTTCGAAAACGACGATCCCAATTTTCAATCGGTCACTTCCAAGGGCCCCACAACTCTGGTGATTACAAGGGAATCACTGCTTGCTGCACAGAAAGATGATTTGCGCCGAGTAATGGAAATGTTATCATTAAGAGAGCACCATGCCCGTACTCTGCTTATATATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTGTATGTAGACAAGGGAAAAGCTGCCTTGTTTGCTGAAGCTGGTGTTAGTGTGGATGAACAGCGTGATCCTGACCCATCAGTTCCTTCTACAGTCACGTGTGAAATCTGCATAGAGGACGTTCCCAATCATGAAGCGACAAGAATGGACTGTGGGCACTGTTTTTGCAACAGCTGTTGGACAGCACACTTCATTGTCAAGATAAATGAGGGTCAAAGTAGACGCATAAGGTGCATGGCACACAAATGTAACGCTATTTGTGATGAAACTGTTGTGAGAAATCTAGTCAGTAAAGAAAACCCGGATATGGCTGAGAAATTTGATCGTTTTCTTCTGGAATCCTACATTGAAGACAATAAAAGAGTCAAATGGTGTCCCAGCATCCCTCATTGTGGGAATGCAATACGTGTTGAGGATGACGAATTATGTGAGGTAGAATGTTCATGTGGTCTACAGTTCTGTTTTAGTTGCTTGTCAGAGACGCATTCCCCATGTTCTTGTTTGATGTGGGAGCTCTGGGCTAAGAAGTGTCGAGACGAATCAGAAACTGTTAATTGGATAGCAGTCCATACAAAACCTTGTCCAAAATGCCACAAAGCAGTGGAGAAGAATGGCGGTTGCAACTTGGTTAGCTGCATCTGTGGTCAAGCATTTTGTTGGCTTTGTGGTGGAGCTACTGGGCGAGAACATACTTGGTCAAGTATAGCGGGTCATAGCTGTGGTCGCTACAAACAGCTAGAGAAAACAGCTGAGCAGGCAAAGCGAGATCTATATCGATACATGCATTATCATAATCGCTATAAAGCTCACACAGACTCCTTTAGACTTGAAAGTAAATTGAAAGAGACTATACAAGTAAAGGTTGCTGTTTCAGAGGAGAGGGATTCTACACTCAGGGATTATAGTTGGGTAAATAATGGACTCTCCAGACTTTTCAGATCTAGGCGTGTCCTATCATATTCATATCCATTTGCATTTTATATGTTTGGAGATGAGCTATTTAAGGATGAAATGTCAGAAGAGCAAAGGGAAATAAAACAGCACTTATTTGAGGATCAACAACAACAGCTCGAAGCTAATGTTGAAAAACTTTCCAAAATCCTGGAGGAACCCTTTGACCAGTTTACGGATGACAAAGTTATGGAGATAAGGATTCAAGTCATTAACCTGTCAACCATTATCGACAATCTGTGCCAGAAAATGTATGAGTGCATTGAGAATGATTTATTGGGTTCTCTTCAATTGGGCATTCACAGTATTGCCCCATACAAGTCAAAAGGCATAGAGAGGGCATCAGAACTTTCAACTTGTTGGAACTATACAGCCAATAATGCTGGTGGGACAGCAGAACTTGGTCGTCCCTCTGGGTCTGGGAGTTCAGATGATATTGGATGTCCTTCTCCCAAGCGTGCTAGGAAAGAAAGTGCTGGTGGTGTCCTTTTTGATCTAAACTTGCCAGCGGAGCATTTGGACGCAGTTGATGCTGATGCAAGTTGGAGAGGGAAGCTTCTCCTTTTACTGATTCTATTCTATAGGGTCATGAACTTCTCAATGATGATGACATTAGGACTTGCATATGATTTGAGAAGAGCTTGGTTCTCAACAATCAGCTTGCCTATCCCTAACATCAAAATCGGTGAGTTACGGATGTGTGCAACTGCCCTATTGGCCTTAACATAA 1935 0.4284 MDDYLSSDEDYHYSDQGSVEGFENDDPNFQSVTSKGPTTLVITRESLLAAQKDDLRRVMEMLSLREHHARTLLIYHRWDVEKLFAVYVDKGKAALFAEAGVSVDEQRDPDPSVPSTVTCEICIEDVPNHEATRMDCGHCFCNSCWTAHFIVKINEGQSRRIRCMAHKCNAICDETVVRNLVSKENPDMAEKFDRFLLESYIEDNKRVKWCPSIPHCGNAIRVEDDELCEVECSCGLQFCFSCLSETHSPCSCLMWELWAKKCRDESETVNWIAVHTKPCPKCHKAVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKQLEKTAEQAKRDLYRYMHYHNRYKAHTDSFRLESKLKETIQVKVAVSEERDSTLRDYSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMSEEQREIKQHLFEDQQQQLEANVEKLSKILEEPFDQFTDDKVMEIRIQVINLSTIIDNLCQKMYECIENDLLGSLQLGIHSIAPYKSKGIERASELSTCWNYTANNAGGTAELGRPSGSGSSDDIGCPSPKRARKESAGGVLFDLNLPAEHLDAVDADASWRGKLLLLLILFYRVMNFSMMMTLGLAYDLRRAWFSTISLPIPNIKIGELRMCATALLALT 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0218 644 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 54 402 IPR031127 GO:0004842|GO:0016567
Lele47g0218 644 Gene3D - 248 495 - -
Lele47g0218 644 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Lele47g0218 644 SUPERFAMILY RING/U-box 190 258 - -
Lele47g0218 644 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Lele47g0218 644 FunFam RBR-type E3 ubiquitin transferase 114 204 - -
Lele47g0218 644 Pfam Ariadne domain 331 576 IPR045840 -
Lele47g0218 644 SUPERFAMILY RING/U-box 115 202 - -
Lele47g0218 644 MobiDBLite consensus disorder prediction 534 556 - -
Lele47g0218 644 FunFam RBR-type E3 ubiquitin transferase 248 495 - -
Lele47g0218 644 MobiDBLite consensus disorder prediction 1 34 - -
Lele47g0218 644 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 203 IPR013083 -
Lele47g0218 644 SMART ibrneu5 190 252 IPR002867 -
Lele47g0218 644 SMART ibrneu5 260 325 IPR002867 -
Lele47g0218 644 Pfam IBR domain, a half RING-finger domain 190 252 IPR002867 -
Lele47g0218 644 SUPERFAMILY RING/U-box 260 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0218 Lele-ChrLele47 1522023 1528186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0218 59 542 ARIADNE family AT2G16090 73.566 0.0 753