Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0211 ATGATGATGATGATTCCACCGCCTTCTTCTTCTTCTTCTTCTTCAGCTCCTTCTCAGCCACCCCATCTGCGTTTTTACCATTGGGCCCCATCTTCCTCTCCCGCACCGGCCCCTTCTCCGGCTACCCCTGCCCAGACCCTCCTTCCGGTACCGGTAAGCGATACATCACCTCTGCCCTCAAAGTTGTCGATTGACTTCAGTCCACCACTGATTGCAATGGTGGTCGTCGTTGCCGCCGCCTTCCTCGTCGTCACCTATTCCCGCCTAATCTCCCGCCACCTCATGCCTCCGATTACCCGCCTCACTCGACGGTGGCGCCGCCGTAGGCGACGTACTTACCTCCCCTCCTCCGCCGGCGACCTCGACTCACTCCCTTATGATTCTCCTTTTGAACCAATTGATGGCCCTCACATGTTCTCCCCTTATGGTCTCGACGAGTCCATCATCAAGACCATACCGTTTTCCCTCTACACAGCCAAATCAAAGAATCAATTCGAAGAATCTCTACGAGATTGCGCTGTTTGTTTGTTGGAGTTCGAAGATGATGAGTATGTCCGAACGCTGCCGTTTTGTTCTCACACTTTTCATTTGGATTGCATCGACGTTTGGCTCAGGTCGCACGCGAATTGCCCTCTCTGCCGCGCCGGAGTTTTGTGCCCGGAGTCCCCGTTCACGCCAATGATGGCGGCGAGGATTCGGCCGAGCCTCGACGATGACACGATTTTGCATAGAATCAGTATGGACCCTCTGGTCGAAGCTCCATCGCCAGTGGCTCATTCTCTGGTGTCGGAGATCACTCCTTGCAACGAAGACCAATCGCCAAGGACTAACCACGCGACTCCGGATGACGATCGATTCAACGGGGGTCGTGATTTCCTCCTTAAGCGATCCTACTCGTTTGGATTCGAACGGACCCTGGCTTCGGAGAGAATGGTGATGGAGCCGGCGACGGCGTCACCGTGGCGGTACCACCGAAGGGGAAGCAGCAGCAGCTTCTGGAGCAAAAGGCCATCACCGTTCGGATCGTTGGGAAAGTCAAGAGTGTTCTCGTTCAGATACTATAGAGGGATGAAGTCGCCGTTCTTCCGGAGACGAGGGTTCTTCCCTCTGTCGGAATCAAGCATGAGGTCATACAACGGAGTAGGAGGAGGAGGAGGAAGCTCGTCTCGTCGAAGCAAGTCCATAGCAAGCCCGATGTTCCTGAGGTCTTCGGCGGCGTTGGCAGCGGTTGGAGCAGCAACTTTCTCGTCGAGCAGGCTAAGGTGCGGCGACCCGGAGGCGTTGCTGTCACCGGAGAGATACAACAGGGGATAA 1314 0.5556 MMMMIPPPSSSSSSSAPSQPPHLRFYHWAPSSSPAPAPSPATPAQTLLPVPVSDTSPLPSKLSIDFSPPLIAMVVVVAAAFLVVTYSRLISRHLMPPITRLTRRWRRRRRRTYLPSSAGDLDSLPYDSPFEPIDGPHMFSPYGLDESIIKTIPFSLYTAKSKNQFEESLRDCAVCLLEFEDDEYVRTLPFCSHTFHLDCIDVWLRSHANCPLCRAGVLCPESPFTPMMAARIRPSLDDDTILHRISMDPLVEAPSPVAHSLVSEITPCNEDQSPRTNHATPDDDRFNGGRDFLLKRSYSFGFERTLASERMVMEPATASPWRYHRRGSSSSFWSKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSMRSYNGVGGGGGSSSRRSKSIASPMFLRSSAALAAVGAATFSSSRLRCGDPEALLSPERYNRG 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0211 437 Pfam Ring finger domain 171 214 IPR001841 -
Lele47g0211 437 CDD RING-H2_PA-TM-RING 171 214 - -
Lele47g0211 437 SMART ring_2 172 213 IPR001841 -
Lele47g0211 437 SUPERFAMILY RING/U-box 165 220 - -
Lele47g0211 437 MobiDBLite consensus disorder prediction 1 52 - -
Lele47g0211 437 MobiDBLite consensus disorder prediction 1 20 - -
Lele47g0211 437 FunFam RING-H2 finger protein ATL65 137 218 - -
Lele47g0211 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 218 IPR013083 -
Lele47g0211 437 ProSiteProfiles Zinc finger RING-type profile. 172 214 IPR001841 -
Lele47g0211 437 PANTHER RING-H2 FINGER PROTEIN ATL16 53 239 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0211 Lele-ChrLele47 1486341 1487654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0211 64 436 C3H Transcription Factor Family AT3G18930 52.357 2.05e-98 299