Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0195 ATGAGAGTTCCTAAGACGTTTGTGAATCATCATGGGAATGATTTCCCTACCATTATAACTTTACATGATCCTAATGCTCGAGAATGGAAAATTGGTTTCGAGAAGAATGAAGACGACGACGACGATGTTTGGTTCTCAGAAGGTTGGGATAAGTTTCTGGAGTATTACTCCATCACCAAAGAACACTTTCTGGTTTTCAGATACGAAGGAGAGTCAAGATTCCGTGTTCTAATATTCGACATGGGTGGATCAGAAATTCAATACCCGAGTCCCGAGAAAAACCAGGCTGTCCCCATATTCAATCCTGTGACCTCCAAGTCACATGACAACAACAACGAACATGATCATCACAGGAGTCAAAATAATAATGATGATGATGACGGTATTGGGAATCACTTTACTGAAGAATATTTTCCTGATGATGAGGATGATTCTACTCATGCATATGAAGAAGATAAATTCTACTACAGCACTTGTTCATCTGAATCTACTCCTACTTCTCCATCTAAATCCATTTCTTCAACAAAAAGACGAGGCTTCACCAAATTCATAGATCAAGCATCAAAAACAAAGAGGCGTGAACGTAGCAGTGACTGGGGAAGTGATGACCGCAGTGATGGAGGTTCAAATCGGAGAAGAAAAGGAAGAAGAATAAGAAGATCGAAAGAAGGAAGACGTAGAGGGAGAGAAAACAGAGAGGACCAAGTGAAACAAACAGTGAAATCGAAATCATACAAAAAGAGGCACATATCAGATAGATTAAGAGCCAAGGTTATTCAAGCTGCTGACGAGCACAGGTCTGAGTTTCCTTCTTTCAGAGCTGTCTTGAGACCTCACAACTTCTATAACAGTTTTGTGTATGTGCCAGCACGTTTTGGAGTGAAGTATATGGGAGGAGGGTCAGAGAAGATAAAGCTGGAGAACGTGAAGGGGGAGAAGTGGGAAGCTCGATGCTTTTACAGGAATGGATCAGGCAATGGGATGAACATAGGCGAAGGATGGGCAAAGTTCAAGACGGAGAATGCGGTCAAGGAAGGAGATGTCTGTGTGTTCGAACTCGCGAAGAAGAAGGACATTGTTTTGAGAGTTCAGATATTTCGTGTCAGACATTTTGCAGATCGTTAA 1125 0.4169 MRVPKTFVNHHGNDFPTIITLHDPNAREWKIGFEKNEDDDDDVWFSEGWDKFLEYYSITKEHFLVFRYEGESRFRVLIFDMGGSEIQYPSPEKNQAVPIFNPVTSKSHDNNNEHDHHRSQNNNDDDDGIGNHFTEEYFPDDEDDSTHAYEEDKFYYSTCSSESTPTSPSKSISSTKRRGFTKFIDQASKTKRRERSSDWGSDDRSDGGSNRRRKGRRIRRSKEGRRRGRENREDQVKQTVKSKSYKKRHISDRLRAKVIQAADEHRSEFPSFRAVLRPHNFYNSFVYVPARFGVKYMGGGSEKIKLENVKGEKWEARCFYRNGSGNGMNIGEGWAKFKTENAVKEGDVCVFELAKKKDIVLRVQIFRVRHFADR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0195 374 SUPERFAMILY DNA-binding pseudobarrel domain 1 89 IPR015300 -
Lele47g0195 374 MobiDBLite consensus disorder prediction 157 181 - -
Lele47g0195 374 ProSiteProfiles B3 DNA-binding domain profile. 271 369 IPR003340 GO:0003677
Lele47g0195 374 MobiDBLite consensus disorder prediction 108 136 - -
Lele47g0195 374 Gene3D - 1 83 IPR015300 -
Lele47g0195 374 PANTHER B3 DOMAIN-CONTAINING 2 364 - -
Lele47g0195 374 MobiDBLite consensus disorder prediction 226 241 - -
Lele47g0195 374 CDD B3_DNA 1 80 IPR003340 GO:0003677
Lele47g0195 374 MobiDBLite consensus disorder prediction 157 248 - -
Lele47g0195 374 MobiDBLite consensus disorder prediction 87 144 - -
Lele47g0195 374 MobiDBLite consensus disorder prediction 182 210 - -
Lele47g0195 374 SMART B3_2 272 369 IPR003340 GO:0003677
Lele47g0195 374 SMART B3_2 1 82 IPR003340 GO:0003677
Lele47g0195 374 ProSiteProfiles B3 DNA-binding domain profile. 1 82 IPR003340 GO:0003677
Lele47g0195 374 MobiDBLite consensus disorder prediction 211 225 - -
Lele47g0195 374 CDD B3_DNA 270 367 IPR003340 GO:0003677
Lele47g0195 374 SUPERFAMILY DNA-binding pseudobarrel domain 266 367 IPR015300 -
Lele47g0195 374 Pfam B3 DNA binding domain 276 368 IPR003340 GO:0003677
Lele47g0195 374 Pfam B3 DNA binding domain 1 80 IPR003340 GO:0003677
Lele47g0195 374 Gene3D - 250 371 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0195 Lele-ChrLele47 1382265 1384332 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0195 1 368 B3 DNA Binding Superfamily AT3G18990 29.223 2.85e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele47g0195 B3 3e-18 CL0405