Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0194 ATGCCGCGTCCTTGTTTTCACAAGCTTGTTCTTCCGTCCACCATCCAAGCCGGTCAACTGAGGGTTCCAGATAATTTTTTGAGGAAGTTTGGTGGGGAGCTCTCTACAATTGCTACCCTCAGTGTTCCTGATGGCAGTGTCTGGCGTATTTGTTTAAAAAGGGTAGACAACAAATTTTGGCTCCATGATGGTTGGAAGGAGTTCGTTCAACGGTACTCCATTGGTGTTGGATGCTTTTTGGTGTTCAGATATGAAGGAAATTCATCTTTCAATGTTCATATTTTTAATTTGGCTGTTTCTGAGATAAATTATCAATTAGCGAATCGAAATAGTGACGAACAGCCTTACTTTACCAGCCAACATATTTTTGATGAAATGGAGGATGAAGATTCCACTGAATACTCGGAGTCAACACCTTCTCATTTAACCCCTGGTGCATTTAATAACAAGGTTATTGCTGGACCTGCAGATCAATTGACACCTAGCAAGAATTATACTCCTTCACCATTGCAGAATTTGTTTAATGGGTCTAAACTTAATAGCTTCAACTGGGGAGACACCGTTTCTTCAAAGGGTGCCAATTCACAAAACAATCAATTGACCAAAGATAAAGGTGTTCAGTTCAATGCAGCAGAGTTTAAAAGGTCTACTGAAGAGTTGAAATTGCGCGCTTCCAATAATGACATGCAGAGAGTTAAAAAAACTGTAAGAAAAAGGCAGAAAACTGATCCTAATGGTGAAGAATCCTCTCCTCATCATGAAGAGGAGGTAGAAATGCGTTTTAGATTCTATGAAAGCGCTTCTGCAAGAAAAAGAACCGTGACAGCGGAAGAAAGAGAAAGGGCAGTTAATGCTGCAAAAGAATACGAACCGCCTAATCCTTTCTGTAGGGTTGTCCTGCGGCCCTCCTATCTGTATAGGGGATGCATAATGTATTTGCCATCTTGCTTTGCAGAAAAGCATCTGAATGGGGTTTCAGGTTTCATCAAACTCCAGAGTACTGAGGGGAGACAGTGGCCCGTTCGCTGCCTTTATAGAGGCGGTAGAGTGAAGTTAAGCCAGGGATGGTTCGAATTCGCCCAGGATAACAACCTCGGGGAAGGCGACGTCTGTGTTTTCGAGCTGCTTAGAGCTAGAGAAGTAGTGCTGAAAGTTACTATATTCCAAGTCCTCGAAGAAGATGTGGGATTATTGATCCCTCCCATACAGCAAAACCAAAGCATGAGTCCAACCTCAAAACTGTTGAACAATCCCTTGCACCTGCAAGATGTTAGCCCCATTAAAATGATTAGAAATTAG 1299 0.4226 MPRPCFHKLVLPSTIQAGQLRVPDNFLRKFGGELSTIATLSVPDGSVWRICLKRVDNKFWLHDGWKEFVQRYSIGVGCFLVFRYEGNSSFNVHIFNLAVSEINYQLANRNSDEQPYFTSQHIFDEMEDEDSTEYSESTPSHLTPGAFNNKVIAGPADQLTPSKNYTPSPLQNLFNGSKLNSFNWGDTVSSKGANSQNNQLTKDKGVQFNAAEFKRSTEELKLRASNNDMQRVKKTVRKRQKTDPNGEESSPHHEEEVEMRFRFYESASARKRTVTAEERERAVNAAKEYEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQSTEGRQWPVRCLYRGGRVKLSQGWFEFAQDNNLGEGDVCVFELLRAREVVLKVTIFQVLEEDVGLLIPPIQQNQSMSPTSKLLNNPLHLQDVSPIKMIRN 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0194 432 CDD B3_DNA 294 388 IPR003340 GO:0003677
Lele47g0194 432 Pfam B3 DNA binding domain 8 95 IPR003340 GO:0003677
Lele47g0194 432 Pfam B3 DNA binding domain 299 388 IPR003340 GO:0003677
Lele47g0194 432 ProSiteProfiles B3 DNA-binding domain profile. 296 391 IPR003340 GO:0003677
Lele47g0194 432 MobiDBLite consensus disorder prediction 219 257 - -
Lele47g0194 432 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Lele47g0194 432 Gene3D - 273 392 IPR015300 -
Lele47g0194 432 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Lele47g0194 432 MobiDBLite consensus disorder prediction 128 172 - -
Lele47g0194 432 SMART B3_2 6 98 IPR003340 GO:0003677
Lele47g0194 432 SMART B3_2 296 391 IPR003340 GO:0003677
Lele47g0194 432 SUPERFAMILY DNA-binding pseudobarrel domain 289 389 IPR015300 -
Lele47g0194 432 Gene3D - 1 98 IPR015300 -
Lele47g0194 432 CDD B3_DNA 4 96 IPR003340 GO:0003677
Lele47g0194 432 PANTHER B3 DOMAIN-CONTAINING 3 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0194 Lele-ChrLele47 1377335 1380554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0194 1 396 B3 DNA Binding Superfamily AT3G18990 50.000 1.21e-128 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele47g0194 B3 1.6e-18 CL0405