Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0187 ATGCTCTTCCCACTACCACGCACCAGTGCCCATTTTCTTCGGCAGAATCTCGCAATCTTGAATCTGAAGGAGGAATCAGCAAAACTCAAGGCACCTATTTCTCAGCCGTTGCTGGCAGACTTTATTCCCTTGACGAAAGAATGTGATTTGAAAAAGGATGATAAGAAAGAAAAGGAATGTAGAGATAAGAAGACTTGGATGAGCTCTGTTCAACTCTGGAATACCGATAATCATCCCACTACTAACGATGCTTATGAACAAAGACAACAACACTATGAATTAGAAAACAAGAAATGCGAAGAGGAAGGACAATCTGTGCCTGAGGATCCATTCCAATCTCGTACAAACGGTGATAACAGATGCAGGGCGTTCTTGGCTCTTTCAACCTACTCTAGCATCCCTGCTACACCAGTGACAACTAAGGAAGAAAAGGAAGACTCCATTAATGGGCTCTCTCTTATGACTCCTGGTATTAGAAGTTTGAGGGAAGGTTATGGTTCAAGTGGATCGAGAAGTAGCTCTAGCAGAGCAGTTTCTTCTTCAACTCCATGTTCACAGCCAATTATACCCACAGGTCATCAGCAGCAGTCGCAGAAGCAAGTTGCCCGGAAACAGAGGAGGTGCTGGTCGCCAGAGCTGCACCGACGATTTGTCAATGCATTACAGCAACTCGGAGGTTCTCTAGCGGCAACCCCAAAACAAATAAGAGAACTCATGCAGGTTGATGGCTTGACCAACGATGAAGTCAAGAGTCATTTACAAAAATATCGACTTCACACTCGAAGAACGCCTGCTACTGCAGCTACGCCTGCTAATCAATCTGTATTTCTTGGAGGCTTGTGGATGTCTCCAGATCAACACAATGAATCCTCCAAGGATAGCAGTTCTGGGTCTGGTTCTCCTCAAGGTCCTTTCCAGCTAGCAGCATCCGGTGGAGGGATGTCTCGAACAGAAGGTGACAGCATGGAAGACGATGAAGACGATGAGAGCTTTAGCTGGAAAAGTCACATTCACAAAACTGGAAAAGATGTATAG 1035 0.4531 MLFPLPRTSAHFLRQNLAILNLKEESAKLKAPISQPLLADFIPLTKECDLKKDDKKEKECRDKKTWMSSVQLWNTDNHPTTNDAYEQRQQHYELENKKCEEEGQSVPEDPFQSRTNGDNRCRAFLALSTYSSIPATPVTTKEEKEDSINGLSLMTPGIRSLREGYGSSGSRSSSSRAVSSSTPCSQPIIPTGHQQQSQKQVARKQRRCWSPELHRRFVNALQQLGGSLAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRTPATAATPANQSVFLGGLWMSPDQHNESSKDSSSGSGSPQGPFQLAASGGGMSRTEGDSMEDDEDDESFSWKSHIHKTGKDV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0187 344 Pfam Myb-like DNA-binding domain 206 257 IPR001005 -
Lele47g0187 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 18 333 IPR044787 GO:0003700|GO:0006355
Lele47g0187 344 Coils Coil 82 102 - -
Lele47g0187 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 261 IPR017930 -
Lele47g0187 344 MobiDBLite consensus disorder prediction 329 344 - -
Lele47g0187 344 FunFam Myb family transcription factor 203 261 - -
Lele47g0187 344 MobiDBLite consensus disorder prediction 136 200 - -
Lele47g0187 344 MobiDBLite consensus disorder prediction 165 200 - -
Lele47g0187 344 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 204 259 IPR006447 GO:0003677
Lele47g0187 344 MobiDBLite consensus disorder prediction 284 305 - -
Lele47g0187 344 MobiDBLite consensus disorder prediction 98 117 - -
Lele47g0187 344 Gene3D - 203 261 - -
Lele47g0187 344 MobiDBLite consensus disorder prediction 278 344 - -
Lele47g0187 344 SUPERFAMILY Homeodomain-like 202 262 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0187 Lele-ChrLele47 1331590 1333819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0187 34 285 G2-like Transcription Factor Family AT2G03500 37.453 3.04e-39 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele47g0187 Myb_DNA-binding 6.7e-07 CL0123