Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0179 ATGGCTCAGCCAACTTCCGACGCCGCCGATCTGAATCCGCAGCAACAGCAGCAGCCGCAGCCGCAGCAATGGACGCAGCCGCATCAGTATCCCCAACAATGGATGAGCATGCAGTATCCGGCTTCGGCTATGGCGATGATGCAGCACCAGATGATGATGTATCCGCCGCATTATGTCCCTTACGTTCAGCAATATTATCAGCCGCCATACCACAACCCGTACTTGAAACAGCCGCCGCCACAGCCGCAGCACCACCAGCAGAGCTCCAACGATGAGATCAGGACGATCTGGCTCGGTGACCTTCATCATTGGATGGACGAGAACTACCTAAATAGCTGCTTTGCTCACACAGGCGAGGTATATTCAGTGAAGGTTATACGAAATAAGCAAACTGGGCAGTCCGAGGGATATGGATTTGTTGAGTTTTGTACACGTGGAACAGCTGATAAAGTTTTACAGAGCTACAATGGTACTATGATGCCGAATACAGATCAGCCATTTCGCCTAAATTGGGCTGCTTTCAGTTCTGGTGATAGGCGATCTGATGCTAATTCAGATTACTCTATATTTGTTGGGGACTTGGCTGTAGATGTTACTGATGCTATGCTACAGGAAACCTTTGCAAGCAGATATTCGTCTGTTAAGGGAGCAAAGGTTGTCATTGATGTTAGCACTGGCCGCTCAAAAGGTTATGGTTTTGTTAGGTTTTCTGATGAAAATGAGAGATCCAGGGCACTGACTGAAATGAATGGTCAATATTGTTCAAGTAGGCCAATGCGAATAAGTATTGCAACTCCCAAGAAATCATTCGGACATCAACAACATTACTCTTCACAAGCTGTGGTGTTGGCAAATGGATATGCTTCTAATGGTGCTATGGCCCAAGGTTCCCCGTCTGAAGGGGACTCTTTTAACACAACTATATTTGTTGGAGGGCTTGATTCTGATGTCAGTGATGAAGATCTCAGACAACCATTTTTGCAATATGGTGAGGTTGTCTCTGTGAAGATACCGGTTGGAAAGGGGTGTGGTTTTGTTCAATTTGCTAATAGAAAGAATGCAGAGGAGGCGATTCAGGCATTGAATGGGACAGTAATAGGGAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCGGGAAACAAGCATTGGAGGTCAGATTCCAATGGAGGTCAGCATGGAGGGCAAGGTTATGGTGTAAGACAGCATCAGGCATGA 1218 0.4696 MAQPTSDAADLNPQQQQQPQPQQWTQPHQYPQQWMSMQYPASAMAMMQHQMMMYPPHYVPYVQQYYQPPYHNPYLKQPPPQPQHHQQSSNDEIRTIWLGDLHHWMDENYLNSCFAHTGEVYSVKVIRNKQTGQSEGYGFVEFCTRGTADKVLQSYNGTMMPNTDQPFRLNWAAFSSGDRRSDANSDYSIFVGDLAVDVTDAMLQETFASRYSSVKGAKVVIDVSTGRSKGYGFVRFSDENERSRALTEMNGQYCSSRPMRISIATPKKSFGHQQHYSSQAVVLANGYASNGAMAQGSPSEGDSFNTTIFVGGLDSDVSDEDLRQPFLQYGEVVSVKIPVGKGCGFVQFANRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRSDSNGGQHGGQGYGVRQHQA 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0179 405 MobiDBLite consensus disorder prediction 377 405 - -
Lele47g0179 405 Gene3D - 174 280 IPR012677 -
Lele47g0179 405 CDD RRM1_SECp43_like 95 175 - -
Lele47g0179 405 SUPERFAMILY RNA-binding domain, RBD 299 399 IPR035979 GO:0003676
Lele47g0179 405 CDD RRM3_NGR1_NAM8_like 305 376 - -
Lele47g0179 405 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 83 382 - -
Lele47g0179 405 FunFam Polyadenylate-binding protein RBP47 288 404 - -
Lele47g0179 405 FunFam Polyadenylate-binding protein RBP47B 175 277 - -
Lele47g0179 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 174 IPR000504 GO:0003723
Lele47g0179 405 SUPERFAMILY RNA-binding domain, RBD 52 175 IPR035979 GO:0003676
Lele47g0179 405 MobiDBLite consensus disorder prediction 1 29 - -
Lele47g0179 405 SUPERFAMILY RNA-binding domain, RBD 171 278 IPR035979 GO:0003676
Lele47g0179 405 FunFam Polyadenylate-binding protein RBP47B 93 173 - -
Lele47g0179 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 378 IPR000504 GO:0003723
Lele47g0179 405 Gene3D - 288 405 IPR012677 -
Lele47g0179 405 Gene3D - 93 173 IPR012677 -
Lele47g0179 405 CDD RRM2_SECp43_like 186 265 - -
Lele47g0179 405 SMART rrm1_1 95 170 IPR000504 GO:0003723
Lele47g0179 405 SMART rrm1_1 307 374 IPR000504 GO:0003723
Lele47g0179 405 SMART rrm1_1 188 262 IPR000504 GO:0003723
Lele47g0179 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 266 IPR000504 GO:0003723
Lele47g0179 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 259 IPR000504 GO:0003723
Lele47g0179 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 163 IPR000504 GO:0003723
Lele47g0179 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 371 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0179 Lele-ChrLele47 1276136 1280355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0179 93 375 Eukaryotic Initiation Factors Gene Family AT2G23350 28.028 2.96e-28 115