Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0172 ATGGTGGTTTCTAAGTTAACATACGAAGAATGCAGGAGACAACGGCTGGAAGAAAACAAGAAGAGAATGGAGGAACTAAACCTCAACAAGCTTGCTACTGCTTTGAAACCTTTACCTTCACCTAAGTCTTCTCCTGCGAAACCTAGGGTGCCACGTCAGGCAGTGGGCCCTTCTTCGGCTCCTGTAAGAAGGTCTAGTCGCGTAGCCAGCTTACCACCTCCAAACTATAAGGAAGTCCGCATTGAGCCTTTGCTGAGACCAAGAAGGTCGTGTCAGAAAAGGGACTTGCCGAATCGAGTTTATGCTTCAGATGAAGTTAGGCAATATGCAATTGAAAGTGCTGAAGAACTTCTCTCTGGTTTAGATTCTAAGTACCCAAGTTTTGTCAAGCCTATGCTCCAATCACATGTAACTGGAGGATTTTGGCTTGGTCTTCCTGTTCATTTCTGCAAAACTCATCTTCCTCAACGTGATGAAACAATAACTCTGATGGATGAGGATGGGAACGAGTCTCCTACGAAATACCTTGCTGATAAAACTGGTCTTAGTGGTGGCTGGCGAGGTTTCTCAATTGATCATGAACTAGTTGATGGGGATGCATTGGTGTTTCAACTGATCAAACCCACAAAATTTAAGGTGTTCATAATTAGAGCATATCAATCGGAAAACAAAGAGGAAGGAGATGAAGATTTGGATGCTTCACTCTTGAACAGGAGCTCCAAAAGAGTCAGAGCAAGTACAAGTGACTCCACCTCTACCCTCCAATCCCTCTCACTGGCACTCAATTCTCTGCGTCATTTTTACAATCCATTGGATCCCTCTCTTCCCAGGGCCTCACATCTTGCCGCATCGGTGCAACAGATTGTACACGACTATGCTTGGGACTCGGTAATGTGTGATCCAGTACCAGATTCTGTTCTGAATTACCGAGCTGTTCGGTCGAATTTGGTTGTTTTATTTTCGCCTATTAGTAGATCACTGAAGTATTTATCTGAATTTTTCGATGTGAAGCTAGGTCACGAGTCGTTGAAAATGTGGGTTCGTTTTGTGAGAGATTCTCTGGGTTCTTCAGAAGCGATCTTAGATGTAAGCAGGAATCCAATAGAATATAACTGCTGTGATCTTGAGTTGATCAAATTCAGATTCTATGGTAAATATGATGGTGTTCGGTTTAATCCAGAATTGATTGATCTGCCAACAGAAGGCTGTGGACAAAAGGAAAAGTTTTGGAAGCAATTTGGTAATGGAATCACAAAATTTAGGATTAAGGCTCTGCAGAGGAATGATGCTTTTGTGAAACTAAGCAATCGCATATCTGATTCTATTCTTCTACAAGAAGTATTTGGTGAATCCAAGAAAAAGAATAAGGAAATTTCAAATGAATTCTTCACGGATAGGGTTCTTGAAATTCTTGCAACTGAATCTGGTTTCATGAGGCGGAGAAACTCTGTACCCATTTGGCAAATGCTCGAGTTTTCTTTATAA 1485 0.4182 MVVSKLTYEECRRQRLEENKKRMEELNLNKLATALKPLPSPKSSPAKPRVPRQAVGPSSAPVRRSSRVASLPPPNYKEVRIEPLLRPRRSCQKRDLPNRVYASDEVRQYAIESAEELLSGLDSKYPSFVKPMLQSHVTGGFWLGLPVHFCKTHLPQRDETITLMDEDGNESPTKYLADKTGLSGGWRGFSIDHELVDGDALVFQLIKPTKFKVFIIRAYQSENKEEGDEDLDASLLNRSSKRVRASTSDSTSTLQSLSLALNSLRHFYNPLDPSLPRASHLAASVQQIVHDYAWDSVMCDPVPDSVLNYRAVRSNLVVLFSPISRSLKYLSEFFDVKLGHESLKMWVRFVRDSLGSSEAILDVSRNPIEYNCCDLELIKFRFYGKYDGVRFNPELIDLPTEGCGQKEKFWKQFGNGITKFRIKALQRNDAFVKLSNRISDSILLQEVFGESKKKNKEISNEFFTDRVLEILATESGFMRRRNSVPIWQMLEFSL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0172 494 SMART B3_2 128 220 IPR003340 GO:0003677
Lele47g0172 494 CDD B3_DNA 126 217 IPR003340 GO:0003677
Lele47g0172 494 MobiDBLite consensus disorder prediction 32 74 - -
Lele47g0172 494 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 53 221 IPR044837 -
Lele47g0172 494 Pfam B3 DNA binding domain 128 215 IPR003340 GO:0003677
Lele47g0172 494 ProSiteProfiles B3 DNA-binding domain profile. 128 219 IPR003340 GO:0003677
Lele47g0172 494 Coils Coil 6 33 - -
Lele47g0172 494 Gene3D - 104 220 IPR015300 -
Lele47g0172 494 SUPERFAMILY DNA-binding pseudobarrel domain 121 217 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0172 Lele-ChrLele47 1221039 1225253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0172 1 240 B3 DNA Binding Superfamily AT3G19184 59.600 5.63e-83 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele47g0172 B3 3.7e-15 CL0405