LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele47g0168	ATGGAAGACGATGGCGAAGTCGTCTCGTGCTCTTCCGATTCCGATGACGACTACGATGACTTCTCCAGTGAATGTGAAGAGAGCCTAGATAAGGATCATCCGTCAGAGGCCGACATTTATTCTCTACCCGATGAAGAGAGGAAATCGCAGAATATCGATGCTCTTGTGAGGGGCAACCTTGTCGTGAAGACACAATCATTGCTTCCACGAGTTCTTTCTGTAACACAAGGAGCAGTGGTTTGTAGAAAACCCTTTAAACCTCCCAGCTCCGATGGTTACAGTAATGGAAATAAAGAGCTTACACGTCGCCTTTGTGCTCGGAAAAGGTTTGTCCCGTGGGGCTCTACCAGACCGGTATTGGTGGCAATTACCAACCGGTTAAATTCACCAATAAACGTTGAAAAAGATGTTGCGGAAGAGGAAGTGTCTTTGCCACCTGGGATTGAACCTCTTGTGTTGTGGCAGCCTGAAGGCCATGAGGACGAGGGCCGTGATTTGACTCCAATAGCAGTGGATCCGTTGCTTGTTCGTTTCCTTAGACCACATCAGAGAGAAGGAGTTCAGTTTATGTTTGAATGTGTTTCAGGGCTACTTAGCACATCAAATATTCACGGGTGCATCCTGGCAGATGATATGGGTCTGGGGAAGACTTTGCAGTCAATCACACTTCTGTATACACTTCTTTGTCAAGGGTTTGATGGAAAACCAATGGTGAGAAAAGCCATCATCGTGACCCCTACCAGCCTTGTAAGTAACTGGGAAGCTGAAATTAAGAAGTGGGTCGGAGAAAGAGTTCGTCTTGTTGCTCTGTGTGAAAGTACAAGAGATGATGTCATTTGTGGGATTGACAATTTTACAAGTCCCCACAGCTCTCTACAGGTGCTGATAGTATCATATGAAACTTTCCGAATGCATTCATCAAAATTTGGCCATAGTGACTCTTGTGATATACTCATATGTGATGAGGCTCACAGGCTGAAAAATGATCAGACAATTACAAATCGGGCATTGGCTTCTCTCTCATGCAAACGTAGAGTGTTGCTTTCAGGAACTCCTTTGCAGAATGACCTAGAGGAATTCTTTGCGATGGTTAACTTCACTAATCCTGGAATATTAGGTGACATTACACATTTTCGCCGGTACTTTGAGGGACCAATTATTTGTGGAAGAGAACCTACAGCTTCTGCAGACGAGAAGAAGCTAGGTGCTGACCGCTCTGCAGAGTTAAGTGTGAAAGTTAACCAGTTTATATTGAGAAGGACTAATGCATTATTATCAAATCACTTACCGCCAAAGATAGTTGAAGTTGTTTGCTGCAAGTTAACTGCACTCCAGTCAGACCTATATAAATATTTTATACAGTCCAAAAATGTTAAACGTGCAATTGTTGAAGACGTAAAGCAATCAAAGATTTTAGCCTATATAACAGTTCTCAAAAAGTTGTGCAACCATCCAAAGCTTATATTTGATACTATTCGAAGTGGGAGTCCAGGGACTTCGGGTTTTGAGGACTGCATTCGTTTCTTCCCACCAGAGATGTTATCAGGAAGATCTGGCTCATGGACTGGAGGGGATGGAGCTTGGATTGAGTTGTCAGGAAAAATGCATGTGTTAGCAAGATTACTTGCCCAGATACGGCAAAGGACCAATGACCGAATCGTCCTTGTCTCAAACTACACACAGACTCTGGATCTTTTTGCTCAATTGTGTCGGGAACGAAGGTACCCGTACTTGAGGCTTGATGGTGCAACTTCAATCAGTAAAAGGCAGAAGTTAGTAAACCGCTTCAATGACCAATCTAAGGACGAATTCGTTTTTCTCTTGAGCAGCAAGGCTGGTGGCTGTGGCCTCAATTTAATCGGAGGAAATCGATTAGTCTTATTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTTTGGAGGGATGGGCAGAAGAAAAGAGTGTATATTTATAGATTTTTGAGTGCGGGGACAATAGAGGAAAAGGTTTACCAGCGTCAGATGTCAAAAGAAGGGCTACAAAAGGTCATTCAGCAGGAGCAAACAGATAACCTTGAAACGCTGGGTAACTTTTCGACAGAGGTCCTCCGCGATCTGTTCTCGTTTCATGAAACTGTCAAGTCAGAGATTCATGAAAGGATGCATTGCACTCGGTGCCAGACAAATGATGATGGACCTCAAAGCGATGATGGGAAATATGTAGCTCATTCAACAATAAGTAACGATGAATTTGATGAGGAGACCTCTGATGATATAGGTGGATTTGCAAAATTTGCAGGCTGTATACACAAGTTAAAGAAATCAGAAAAGCAGGTAGGGACCCCCTTGGAAGAAGATTTAGGTAGCTGGGGCCATCATTTCTTTCCAACGACTGTACCGGATGCTATCCTTCAGGCTTCAGCCGGAGATGAGGTGAGCTTTGTTTTTACAAACCAAGTTGATGGAAAGCTGACACCAATTGATTCAACCGTGAGTTCAGAGCAACAGCAAGGGCAGAGCAAGGAACTGATGCAGCTAAAACGGAACGTTAAACAAAATCCGGTTCTTTCTTTAGTTCAGAAGCCATCTTACTCACTCAAGCCTTCAATGGGGCCAGCTTTGAGTTGTGTTAGAACGAAGGAAAATATATCAACACAAGCTGTTTTAAATTCCAAAAACTCCCTTGTAAATCAATTACCACAGAAAAGATCATGTCCAACTTATGTCGATTCTGATCAATTAGAATAA	2742	0.4303	MEDDGEVVSCSSDSDDDYDDFSSECEESLDKDHPSEADIYSLPDEERKSQNIDALVRGNLVVKTQSLLPRVLSVTQGAVVCRKPFKPPSSDGYSNGNKELTRRLCARKRFVPWGSTRPVLVAITNRLNSPINVEKDVAEEEVSLPPGIEPLVLWQPEGHEDEGRDLTPIAVDPLLVRFLRPHQREGVQFMFECVSGLLSTSNIHGCILADDMGLGKTLQSITLLYTLLCQGFDGKPMVRKAIIVTPTSLVSNWEAEIKKWVGERVRLVALCESTRDDVICGIDNFTSPHSSLQVLIVSYETFRMHSSKFGHSDSCDILICDEAHRLKNDQTITNRALASLSCKRRVLLSGTPLQNDLEEFFAMVNFTNPGILGDITHFRRYFEGPIICGREPTASADEKKLGADRSAELSVKVNQFILRRTNALLSNHLPPKIVEVVCCKLTALQSDLYKYFIQSKNVKRAIVEDVKQSKILAYITVLKKLCNHPKLIFDTIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGDGAWIELSGKMHVLARLLAQIRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGATSISKRQKLVNRFNDQSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDNLETLGNFSTEVLRDLFSFHETVKSEIHERMHCTRCQTNDDGPQSDDGKYVAHSTISNDEFDEETSDDIGGFAKFAGCIHKLKKSEKQVGTPLEEDLGSWGHHFFPTTVPDAILQASAGDEVSFVFTNQVDGKLTPIDSTVSSEQQQGQSKELMQLKRNVKQNPVLSLVQKPSYSLKPSMGPALSCVRTKENISTQAVLNSKNSLVNQLPQKRSCPTYVDSDQLE	913

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele47g0168	913	FunFam	DNA repair and recombination protein RAD54	150	419	-	-
	Lele47g0168	913	FunFam	DNA repair and recombination protein RAD54-like	526	697	-	-
	Lele47g0168	913	CDD	SF2_C_SNF	531	659	-	-
	Lele47g0168	913	PANTHER	SNF2/RAD54 FAMILY MEMBER	71	840	-	-
	Lele47g0168	913	SMART	ultradead3	175	378	IPR014001	-
	Lele47g0168	913	MobiDBLite	consensus disorder prediction	1	37	-	-
	Lele47g0168	913	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	197	370	IPR014001	-
	Lele47g0168	913	Pfam	Helicase conserved C-terminal domain	538	647	IPR001650	-
	Lele47g0168	913	Gene3D	-	420	728	IPR027417	-
	Lele47g0168	913	MobiDBLite	consensus disorder prediction	1	25	-	-
	Lele47g0168	913	CDD	DEXHc_RAD54	179	420	-	-
	Lele47g0168	913	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	424	724	IPR027417	-
	Lele47g0168	913	Gene3D	-	442	710	-	-
	Lele47g0168	913	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	537	694	IPR001650	-
	Lele47g0168	913	Pfam	SNF2-related domain	182	488	IPR000330	GO:0005524\|GO:0140658
	Lele47g0168	913	Gene3D	-	154	419	IPR038718	-
	Lele47g0168	913	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	166	420	IPR027417	-
	Lele47g0168	913	SMART	helicmild6	564	648	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele47g0168	Lele-ChrLele47	1200969	1207410	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele47g0168	134	668	RAD5 or RAD16-like Gene Family	AT3G16600	24.132	2.42e-24	107

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Lele47g0168		SNF2_N	3.7e-53	CL0023