Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0148 ATGGGTTCCACAGTACTTTCATTGCCTCCTCACTTTTCTCCTTTACTCCAATTGCCTGTTTGTTCCTATCTAGCTGTTTTTGTGTTAATGGCTGCTGCAGATGTTGAGTACCGTTGTTTTGTCGGTGGGCTTGCATGGGGTACCGACAACGATGCTCTCAGCAGGGCCTTTGCTCGTTTTGGCGATGTTATCGACTCGAAGGTTATCAACGATCGCGAGACCGGAAGGTCCAGAGGGTTCGGATTCGTGACCTTCTCCTCAGAACAGTCCATGAGGGATGCGATCGACGGCCTTAACGGTCAGAGCCTCGATGGCCGGAACATCACGGTGAACGAAGCTCAGTCTCGTGGTGGAAGAGGCGGTTACGGCGGTGCCGGCGGCGGTTACGGCGGCGGGAGTGGATATAGCCGTGGTGGAGGCGGATATGGAGGCGGTGGACGCCGTGAGGGTGGATACTACAGGAATGGTGGAGGATATGGCAATAGCGGCGGTTATGGTGACCGTGGATCTCGCTACTCGGGGTGGTGA 528 0.5549 MGSTVLSLPPHFSPLLQLPVCSYLAVFVLMAAADVEYRCFVGGLAWGTDNDALSRAFARFGDVIDSKVINDRETGRSRGFGFVTFSSEQSMRDAIDGLNGQSLDGRNITVNEAQSRGGRGGYGGAGGGYGGGSGYSRGGGGYGGGGRREGGYYRNGGGYGNSGGYGDRGSRYSGW 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0148 175 Gene3D - 30 136 IPR012677 -
Lele47g0148 175 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Lele47g0148 175 MobiDBLite consensus disorder prediction 152 175 - -
Lele47g0148 175 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 34 161 - -
Lele47g0148 175 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 108 IPR000504 GO:0003723
Lele47g0148 175 SUPERFAMILY RNA-binding domain, RBD 37 146 IPR035979 GO:0003676
Lele47g0148 175 SMART rrm1_1 38 111 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0148 Lele-ChrLele47 1057816 1058725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0148 39 119 Eukaryotic Initiation Factors Gene Family AT2G23350 32.099 1.46e-08 51.2