Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0144 ATGGCTTCAAGCTCTCTGAGCAAAAACAAGGCGTCTGATTCATCTTGGACACCGAAACAGAACAAGCTGTTTGAAAAGGCTCTTGCAAAATATGACAAGGACACTCCTGATCGATGGCAGGATGTGGCTAAAGCGGTTGGCGGCAAATCAGCTGAGGAAGTTAAGAGACACTATGAAATCCTCTTAGAGGATCTAAGACACATCGAATCTGGTCGTGTTCCCATCCCCAACTACAGATCTGCTGGTACCACCGGCAATGTTGATGAAGAAGAGAGGCTCATGAAGTATCTTCAGCTGAATTGA 303 0.4587 MASSSLSKNKASDSSWTPKQNKLFEKALAKYDKDTPDRWQDVAKAVGGKSAEEVKRHYEILLEDLRHIESGRVPIPNYRSAGTTGNVDEEERLMKYLQLN 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0144 100 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
Lele47g0144 100 CDD SANT 15 62 IPR001005 -
Lele47g0144 100 FunFam Transcription factor SRM1 8 75 - -
Lele47g0144 100 Gene3D - 7 75 - -
Lele47g0144 100 SMART sant 12 64 IPR001005 -
Lele47g0144 100 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Lele47g0144 100 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Lele47g0144 100 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Lele47g0144 100 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 85 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0144 Lele-ChrLele47 1032373 1033035 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele47g0144 Myb_DNA-binding 6.4e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1266 45 22589714 22590377 Lele47g0144 47 1032373 1033035 hybridization
Lele46g1358 46 20604696 20609000 Lele47g0144 47 1032373 1033035 hybridization