Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0130 ATGGCCCCATACCAATTAGCCACAACCGCTCCCAAGAAGGACAAGGGTCCTGCTCCGTCCTCGAAACCCGCCAAGTCTGGTGGTGGCAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAGAAGGAGAAGGTAAATAACATGGTGCTATTCGATCAGGCCACCTATGACAAGCTCCTGTCTGAGGCACCAAAATACAAACTCATCACGCCTTCTATCCTCTCTGATCGTTTGCGGATCAATGGATCACTAGCAAGGAAGGCCATTAGAGAATTGATGGCTAGAGGCTCAGTCAGGATGCTGATAATTGGGGTGCTATTAGGTCATCATCAATTAGCCAGAAACTCAATGGCTTGCAGGATTTACATGGCTATGCCATTGAGATTCTTCAACTGCACAAAACGAGCCTTGGCACAAGGATGCTGCAAAATATGGATTGATGAACTTCTAGAAGGTTCTCTGAGGATCTTGGATATTTGCAGTACTTCCAAAGATTCCTTGCTACAATCAAAGGAAAGCATACATGAACTTCAGTCAGCAGCTCGCCAGAAGAAGAGGTCAGGTGGAGAAACAGCACTAACAAATGATGCTGCAAAATACTTACCATCAAGGAAAAATATGAAGAAATCAATCAAGAAGGCCTTAGAAAATTTGAAGAAAATTAAGAAGGAAGCTCTTTTAGAAGCGCTTGTCCGGGAACATCAAGAGAAATGGGTAGATGAGCTATTGGATGGATCTCTAAGGGTCCTAGATTCATGCACATCAGCAAAAGATGCCTTGCTACACACGAAAGAGTGCACCCGGGAGCTTCAATCAAATATAAGAAGAGGAGGAGGAGGAAATGATGTGAAACTCGCGACCGAGGTTAAGCAATTCTTGACCTCAAGGAAGGTAGTGAGAAAAGCAATCTTCAAAGCTCTGGAGAATCTGAAGGGAGTTTCTTCCAATAAATGCAGCCTATCTGATACAAACAAAGATTATCAAACCACGACCTTAGTTAGCTTGTTGAAGGAAGGTGAACTGGTCACTCTTTCAATATTTGAGTCTTTGTTGAACTTCATTTCATGTTCAACACAATTAAAACCAAGAAACTGGTCTTTGGTTTCAAAGCTAATGCCCAGCATAAGGTTAGCTTCTGCTGCACTAGGAGGAGAAGATGAGAATGAGTTTGCAAAAGTGGCTTCTGCTTTGCAGTTCTTTATATTTAATATGACAAGCAAATCAAACAACACCAATGATTTGCAAAAATAA 1251 0.4237 MAPYQLATTAPKKDKGPAPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGSVRMLIIGVLLGHHQLARNSMACRIYMAMPLRFFNCTKRALAQGCCKIWIDELLEGSLRILDICSTSKDSLLQSKESIHELQSAARQKKRSGGETALTNDAAKYLPSRKNMKKSIKKALENLKKIKKEALLEALVREHQEKWVDELLDGSLRVLDSCTSAKDALLHTKECTRELQSNIRRGGGGNDVKLATEVKQFLTSRKVVRKAIFKALENLKGVSSNKCSLSDTNKDYQTTTLVSLLKEGELVTLSIFESLLNFISCSTQLKPRNWSLVSKLMPSIRLASAALGGEDENEFAKVASALQFFIFNMTSKSNNTNDLQK 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0130 416 FunFam 40S ribosomal protein S25 29 111 - -
Lele47g0130 416 PANTHER 40S RIBOSOMAL PROTEIN S25 10 102 IPR004977 -
Lele47g0130 416 Coils Coil 204 228 - -
Lele47g0130 416 Gene3D - 29 113 - -
Lele47g0130 416 Pfam Protein BPS1 133 224 IPR004320 GO:0048364|GO:0048367
Lele47g0130 416 Pfam Protein BPS1 228 413 IPR004320 GO:0048364|GO:0048367
Lele47g0130 416 MobiDBLite consensus disorder prediction 1 41 - -
Lele47g0130 416 Pfam S25 ribosomal protein 19 100 IPR004977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0130 Lele-ChrLele47 935134 940728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0130 10 101 Cytoplasmic Ribosomal Protein Gene Family AT4G34555 91.304 1.79e-39 135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1280 45 22672831 22676209 Lele47g0130 47 935134 940728 hybridization
Lele46g1378 46 20698492 20699979 Lele47g0130 47 935134 940728 hybridization