Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0109 ATGGCCAGGCCAAGAGCTCAAAGACGAACCCTTGATTCTTACATAGTCAGACACATAAACAAAACCATTATCGCTGGCGACTGCGTGCTTATGCGGCCGTCCGACCCGTCAAATCCGTCATATGTGGCTAGGATTGAGCGGATCGAAGCTGACTCGCGTGGCGCCAACGTGAAGGTCCACGTCCGGTGGTATTACCGGCCGGAGGAGTCAATCGGCGGCCGGAGGCAGTTTCACAGTTCTAAGGAGGTCTTCCTTTCTGATCATTTTGATGTTCAGAGTGCCGACACGATCGAGGGCAAGTGTACGGTTCACAGTTTCAAGAGCTACACGAAACTTGAAGCTGTGGGAAACGAGGATTTCTTCTGTCGCTTCGAATACAATTCCGCCACCGGTGCTTTCAATCCGGACAGAGTGGCTGTGTACTGCAAATGTGAGATGCCCTACAACCCTGATGACCTAATGGTCCAGTGTGAGAGTTGCAGTGATTGGTTTCATCCTACTTGTATAGATATGACTGTGGAGGAAGCCAAAGGACTTGACCACTTCTTTTGTGAAAACTGTTCTGGCGAAGGTCAACAGAATGCACAAAATTCTCATACTTAA 603 0.4942 MARPRAQRRTLDSYIVRHINKTIIAGDCVLMRPSDPSNPSYVARIERIEADSRGANVKVHVRWYYRPEESIGGRRQFHSSKEVFLSDHFDVQSADTIEGKCTVHSFKSYTKLEAVGNEDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCESCSDWFHPTCIDMTVEEAKGLDHFFCENCSGEGQQNAQNSHT 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0109 200 SMART BAH_4 21 137 IPR001025 GO:0003682
Lele47g0109 200 SUPERFAMILY FYVE/PHD zinc finger 131 189 IPR011011 -
Lele47g0109 200 Gene3D - 5 135 IPR043151 -
Lele47g0109 200 PANTHER OS08G0421900 PROTEIN 5 198 - -
Lele47g0109 200 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Lele47g0109 200 SMART PHD_3 141 188 IPR001965 -
Lele47g0109 200 Pfam BAH domain 22 136 IPR001025 GO:0003682
Lele47g0109 200 Pfam PHD-finger 141 188 IPR019787 -
Lele47g0109 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 200 IPR013083 -
Lele47g0109 200 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Lele47g0109 200 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0109 Lele-ChrLele47 812765 814662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0109 31 139 Core DNA Replication Machinery Family AT4G14700 28.440 8.87e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele47g0109 BAH 7.5e-23 No_clan