Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0107 ATGGGCGACGCACAGCGCGGAGGTTGTTGCCCGCCGATGGATCTTTTCCGGTCGGAGCCGATGCAGCTGGTTCAGCTCATCATTCCTATGGAGTCCGCTCACCTTACTGTCTCCTACCTCGGTGATCTAGGTCTTCTTCAGTTCAAAGATCTCAATGTTGAGAAGAGCCCTTTTCAACGGACTTATGCAAGTCAGCTAAAAAGATGTGGAGAGATGGCACGGAAATTACGATTTTTCAAGGAGCAAATGTTGAAGGCTGGTGTTTCACCTACATCCTTTTCTACTCAAGTTGATATGAACATAGATGATTTAGAGGTAAAACTTGCTGACCTTGAGGCAGAGTTAACTGAGATGAATGCAAATAGTGAAAAGTTGCAACGCTCTCACAATGAGCTTGTGGAATATAAGCTCGTTCTTCAGAAGGCTGGCGAGTTTTTCCATTCTGCTCAGAATCGTGCCTTGGAGCAGCAGAGAGAACTTGAATCACGTCAGAGTGGAGAATCTATGGAAACACCATTATTACAAGATCAAGAAATGTCAACAGACTCAAAGCAAGTGAAGTTGGGTTTTTTAGCTGGTCTTGTTCCCAGGGAAAGATCCATGGCATTTGAGAGAATTTTATTTCGCGCTACTAGGGGCAATGTGTTTCTGAGGCAAGTTGTTGTTGAGGATCCTGTCACAGACCCTGTTTCTGGAGAAAAGGTTGAGAAAAATGTATTTTTGGTCTTCTATGCTGGTGAAAGAGCAAAAGCAAAGATTCTGAAAATATGTGAAGCCTTTGGGGCAAATCGTTATCCTTTCGCTGAGGAGTCAGGAAAACAAGCTCAAATGATTGCAGAGGTTTCAGCAAGACTCTCGGAGTTGAAGGCTACTATAGATGCTGGACTGCTGCACCAGGGTAACTTGCTACAGATAATTGGGGCTCAATTTAATCAGTGGAATCTTTTGGTGAGAAAGGAGAAGTCCATATATCATACCCTGAACATGCTTAGCCTTGATGTGACCAAAAAATGCCTAGTGGCTGAGGGTTGGAGTCCTGTTTTTGCAACAAAGCAGATACAGGATGCCTTGGAGCGGGCAGCATTTGACTCTAACTCCCAAGTTGGTACCATTTTCCAAGTTTTGCATACCAGGGAGCCACCGCCCACATATTTCCGGACAAATAAATTCACTTCTTCATTTCAGTCCATTGTTGATGCATACGGGGTATCTAAGTATCGGGAGGCAAATCCTGCTGTATTTACCATAATTACCTTTCCATTTCTTTTTGCGGTAATGTTTGGTGATTGGGGGCATGGAATATGTTTGCTACTGGCAACTTTGTATTTAATAATGAGGGAGAAAAAGTTTTCTAGCCAGAAGCTTGGAGATATTATGGAAATGACTTTTGGAGGTCGTTATGTTATTTTGATGATGGCCCTCTTCTCAATCTTCACTGGTTTGATCTATAATGAGTTCTTCTCTGTCCCATTTGAACTCTTTGGTCCCTCAGCATATGCATGCCGTGACTTTTCTTGCAGAGATGCAACTACTGAAGGTTTGATAAAAGTACGTCGCACATACCCATTTGGAGTGGACCCTGTATGGCATGGTACAAGAAGTGAATTGCCATTTCTGAATTCATTGAAAATGAAAATGTCAATTCTTCTTGGGGTGGCTCAAATGAACCTGGGAATTATAATAAGCTTTTGCAATGCCAAATTCTTTGGCAATGGCCTGAATGTATGGTTCCAATTTCTTCCCGAGTTTATATTTCTCAACTGTTTGTTTGGTTACCTATCCCTCCTCGTCATTATGAAGTGGTGCACTGGTTCACAAGCTGATTTGTACCATGTAATGATCTACATGTTTCTGAGTCCTACAGATGATTTGGGAGAAAACCAGCTCTTTCCTGGTCAGAAAACTTTGCAGATTGTACTGCTACTTCTGGCCCTCGTCTCTGTGCCCTGGATGTTGATACCAAAACCTTTTCTTTTGAAGAAGCAGCACAATGATAGGCACCAGGGCGAATCATATGTACCACTTCAAAGTACAGAGGAGAGCTTGCTAGTGGAGTCAAATCATGATTCCCATGGTCATGAGGAATTTGAGTTCAGTGAAGTCTTTGTCCATCAACTCATACATACCATTGAATTTGTACTTGGTGCAGTGTCTAATACAGCTTCTTACCTTCGTCTATGGGCCCTTAGCCTTGCGCATTCGGAGTTGTCAAGCGTTTTCTATGATAAGGTCCTTCTTCTTGCATGGGGGTACAACAACGTGATCATTCTGATAGTGGGTTTCATTGTGTTTGCTTTTGCAACTGTGGGGGTGTTACTCGTAATGGAAACCCTCAGCGCCTTCCTCCATGCTCTGCGTCTTCACTGGGTTGAGTTCCAAAATAAGTTCTATGAGGGAGATGGTTACTTGTTCCATCCGTACTCGTTCGCATTGCTAGATGACGAAGATGATTAA 2454 0.4299 MGDAQRGGCCPPMDLFRSEPMQLVQLIIPMESAHLTVSYLGDLGLLQFKDLNVEKSPFQRTYASQLKRCGEMARKLRFFKEQMLKAGVSPTSFSTQVDMNIDDLEVKLADLEAELTEMNANSEKLQRSHNELVEYKLVLQKAGEFFHSAQNRALEQQRELESRQSGESMETPLLQDQEMSTDSKQVKLGFLAGLVPRERSMAFERILFRATRGNVFLRQVVVEDPVTDPVSGEKVEKNVFLVFYAGERAKAKILKICEAFGANRYPFAEESGKQAQMIAEVSARLSELKATIDAGLLHQGNLLQIIGAQFNQWNLLVRKEKSIYHTLNMLSLDVTKKCLVAEGWSPVFATKQIQDALERAAFDSNSQVGTIFQVLHTREPPPTYFRTNKFTSSFQSIVDAYGVSKYREANPAVFTIITFPFLFAVMFGDWGHGICLLLATLYLIMREKKFSSQKLGDIMEMTFGGRYVILMMALFSIFTGLIYNEFFSVPFELFGPSAYACRDFSCRDATTEGLIKVRRTYPFGVDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIISFCNAKFFGNGLNVWFQFLPEFIFLNCLFGYLSLLVIMKWCTGSQADLYHVMIYMFLSPTDDLGENQLFPGQKTLQIVLLLLALVSVPWMLIPKPFLLKKQHNDRHQGESYVPLQSTEESLLVESNHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAWGYNNVIILIVGFIVFAFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYLFHPYSFALLDDEDD 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0107 817 PIRSF ATP6V0A1 11 817 IPR026028 GO:0000220|GO:0046961
Lele47g0107 817 Coils Coil 94 128 - -
Lele47g0107 817 Pfam V-type ATPase 116kDa subunit family 39 809 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lele47g0107 817 PANTHER VACUOLAR PROTON ATPASES 15 814 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0107 Lele-ChrLele47 798374 806320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0107 13 817 Primary Pumps ATPases(2) AT4G39080 77.970 0.0 1304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1299 45 22796811 22804805 Lele47g0107 47 798374 806320 hybridization
Lele46g1397 46 20810128 20818064 Lele47g0107 47 798374 806320 hybridization