Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0103 ATGAAGATCCAATGTGATGTGTGTGAGAAAATGGAAGCTTCAGTGTTCTGTGCTGCAGACGAAGCTGCTCTCTGCCGTGGCTGTGATTCAAGTATCCACCATGCCAACAAGCTCGCTGGCAAACACATACGCTTCTCTCTTCGCCATCCCACCTCTAAAGATTCCCCTCTCTGTGATATCTGCCAAGAGAAGCGAGCGTATCTGTTTTGCAAAGAAGATAGAGCAATACTATGCAGAGAATGTGACCTTAACATTCACAGAGTCAATGAGCACACACAGAAACACAATAGGTTTCTTCTTACAGGCGTGAAGCTTTCTGATTCTTCTTCTTCTGGGGACCCATCTTCATCTTCCTGCAATGCCATAACCACAGAGCATGATAATAAAAGAGTTGGTAATGGAGGTCGTGAAGGAAGAAGATCGTGTAGGAATTCTAATAACACAAACAGAGCCACAACAACATGGGATTGCAGCAACGAGAATTTCAGTTCTTCTAACTCAGTTGTGAATTCTGATACTATGGTTAGTGACACAGAAGCAGTTTCAACGAGCAGTTTTTCTGAGTATTTGATTGAGACGATACCTGGGTTTTGCTTTGAAGACCTAATCGATGCTTCGTTTCACTCTCTATGTAAGGGTTACTTTAGCAACAATTCAGGGGGTGTTTGGAAAACTGTTTATGAAAGGTCACCAAAATTCCAAAACACCCGTGAAGTTAGCTTTAATGAGGATGAGCATGATTCAACATTTGACGATGAATATGAAGAAGATGTTCATATCCAAAAGCAAACGCAGCAAAAGAAATCTGGAAATGGAAGCAAAATGGCTTCCACTACTAATCTGTTTCGCTCAAGTTCTTCCAATACCGGCCATGTCCTCTTCTGTTCATGTGAGCCAGAAGCTTCGTTACCAAATGATGAAAGCTCAAAGGAGGGGTCTTCTTCTTCAACTACAAGTAGACTTTAG 966 0.4203 MKIQCDVCEKMEASVFCAADEAALCRGCDSSIHHANKLAGKHIRFSLRHPTSKDSPLCDICQEKRAYLFCKEDRAILCRECDLNIHRVNEHTQKHNRFLLTGVKLSDSSSSGDPSSSSCNAITTEHDNKRVGNGGREGRRSCRNSNNTNRATTTWDCSNENFSSSNSVVNSDTMVSDTEAVSTSSFSEYLIETIPGFCFEDLIDASFHSLCKGYFSNNSGGVWKTVYERSPKFQNTREVSFNEDEHDSTFDDEYEEDVHIQKQTQQKKSGNGSKMASTTNLFRSSSSNTGHVLFCSCEPEASLPNDESSKEGSSSSTTSRL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0103 321 MobiDBLite consensus disorder prediction 302 321 - -
Lele47g0103 321 SMART bboxneu5 53 100 IPR000315 GO:0008270
Lele47g0103 321 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lele47g0103 321 MobiDBLite consensus disorder prediction 237 256 - -
Lele47g0103 321 FunFam B-box zinc finger protein 21 1 98 - -
Lele47g0103 321 CDD Bbox1_BBX-like 5 47 - -
Lele47g0103 321 MobiDBLite consensus disorder prediction 105 127 - -
Lele47g0103 321 CDD Bbox1_BBX-like 57 100 - -
Lele47g0103 321 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lele47g0103 321 MobiDBLite consensus disorder prediction 264 288 - -
Lele47g0103 321 Gene3D Classic Zinc Finger 1 99 - -
Lele47g0103 321 MobiDBLite consensus disorder prediction 300 321 - -
Lele47g0103 321 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Lele47g0103 321 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 270 - -
Lele47g0103 321 MobiDBLite consensus disorder prediction 262 288 - -
Lele47g0103 321 MobiDBLite consensus disorder prediction 105 148 - -
Lele47g0103 321 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0103 Lele-ChrLele47 770736 773502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0103 1 207 C2C2-CO-like Transcription Factor Family AT1G75540 50.711 6.62e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lele47g0103 zf-B_box 3.1e-08 No_clan