Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0090 ATGGACGAGTCTGTGACTCTGACAAAGACCCTACCCGGTTCCGAGGTGTTGGAGGAGGAGCAACCTTCGTCCAATTCGAATGGGTTAACTCAGCAAACGCCGGAGCAACTCGTTGCCAGAGCCATAGCTCCTGTGAAGGTGGAGTTCCTTCGTCCTCCTCCTGTTAGAACTTCCTCCACAACCCAGAATGAAGATGTTTCTGAAGAAAAAGACAAGGATAAGGCCTCTGTTCAATCCGGCGGATTGATGAAGGAGAAGAAGTCGAAGCGCCAACTCAAGCGTGAACGTCGTCAGGAACAGAAGTCTGCTAAAAACATTTGTCCGGAAATTGCAAAGACAGGAGATATTAGTTCATGTACTTACAAAGACAAATGCCGCTTCAGCCATGACTTAGAAGCCTTCAAGGCCCAGAAACCAACTGATTTAGAGGGAGAATGCCCTTTTTTTAAAGCAGAAGGTTCTTGTCCCTATTGGTTAGCATGTAGATTTTCCAGCACGCATACAGAAGGCATGCCTTCTGGAAATCTGAGTGATCGGAGAAAAACTACTGAAATAAATGGACTGAGCAAAGATGTTCAAAAGCTTTTATGGAAAAATAAGATGCGCTTCCCCAAGGCAGATGCCAATCTCAAAGCTCTTGGACTTTGGGAATCATCTAAGTTAAAACGGGACAACTATAAGGGGGGTGGCAACGTTGATTCAAAGGATTGCCACAATGCTGATAATAATGGCTCTTGTGTAGTTACCAATGACTTGGGTTCTAACGTAGAAAGCTCTGCTGAGGACACAAAAGTTGATAGTATTGATGGAAATTTAGATTCTGATTCACCTTGCCCTCAAAAGAGAAGAAAAACTGAAGAAAATTTTGGCCTTGATGCGGCAGAAAATGGCGAGTGTGTTACTGACCAAAATATTGACAAAAGCTGCATACAAGCTGAACTTGCTGCAGTGCCTGATGTCATCCCCCCTGAAACTGATCAAAGCATGAAGTTACACCCACGAGAAAAGAAGCTTATTGATTTTAGAGATAAGTTGTATCTTGCGCCCTTGACCACTGTTGGGAATCTCCCATTCAGGAGGATTTGCAAAATATTAGGAGCTGATGTAACATGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCATCAGAATGGGCATTGCTGAGACGTCATTTATCTGAAGATTTATTTGGCGTGCAAATATGTGGGGCATATCCAGACACTATTGCACGAACTGTAGAACTGATAGAGAAGGAATGTACGATAGATTTTATTGATATAAACATGGGTTGTCCAATTGATATTGTTGCAAATAAGGGTGCTGGATCAGCTCTTCTTACAAAACCAATGCGGATAAAAAGTATTGTAGAGGTAGCTTCAGGCACAGTGGAGAAACCAATAACTATAAAGGTACGAACAGCTTATTTTGAAGGGAAAAATCGTGTCGATTCTATTATTGCGGACATGGGCTCTTGGGGAGCTAATGCAGTAACGATACATGGTAGATCACGTCAGCAACGATACAGCAAGCTTGCTGATTGGGACTATGTCTACCAGTGTGCCAGGAAGGCACCTAATACTTTGCAAGTAGTAGGGAATGGAGACATTTTTTCATTTATTGACTGGAACAAACACAAGTCTGAATGCTCTGAGCTTGCTACATGCATGATTGCTCGTGCTGCACTGATTAAGCCTTGGATATTTACAGAAATTAAGGAACAAAGGCACTGGGACATTAGTTCGGGGGACCGATTAAAATTTTTGAAGGATTTTGTACAGTTTGGCCTTCAACACTGGGGTTCTGATACAAAAGGAGTGGAGACAACGAGACGATTTTTATTGGAATGGCTTAGCTACACATGTAGATATATACCTGTTGGCCTTTTAGATGTTATTCCGCAGAGACTAAACTGGCGTCCACCATCTTACTACGGACGGGATGACCTTGAGACTCTAATGGCTTCAGACTCTGCAGCTGACTGGATACGAATATCAGAGATGTTACTTGGCAAGGTTCCAGATGGCTTTTCATTTACGCCAAAGCATAAATCAAATGCTTACGATAGTGCTCAGAATGGCTGA 2091 0.428 MDESVTLTKTLPGSEVLEEEQPSSNSNGLTQQTPEQLVARAIAPVKVEFLRPPPVRTSSTTQNEDVSEEKDKDKASVQSGGLMKEKKSKRQLKRERRQEQKSAKNICPEIAKTGDISSCTYKDKCRFSHDLEAFKAQKPTDLEGECPFFKAEGSCPYWLACRFSSTHTEGMPSGNLSDRRKTTEINGLSKDVQKLLWKNKMRFPKADANLKALGLWESSKLKRDNYKGGGNVDSKDCHNADNNGSCVVTNDLGSNVESSAEDTKVDSIDGNLDSDSPCPQKRRKTEENFGLDAAENGECVTDQNIDKSCIQAELAAVPDVIPPETDQSMKLHPREKKLIDFRDKLYLAPLTTVGNLPFRRICKILGADVTCGEMAMCTNLLQGQASEWALLRRHLSEDLFGVQICGAYPDTIARTVELIEKECTIDFIDINMGCPIDIVANKGAGSALLTKPMRIKSIVEVASGTVEKPITIKVRTAYFEGKNRVDSIIADMGSWGANAVTIHGRSRQQRYSKLADWDYVYQCARKAPNTLQVVGNGDIFSFIDWNKHKSECSELATCMIARAALIKPWIFTEIKEQRHWDISSGDRLKFLKDFVQFGLQHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPSYYGRDDLETLMASDSAADWIRISEMLLGKVPDGFSFTPKHKSNAYDSAQNG 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0090 696 SUPERFAMILY FMN-linked oxidoreductases 344 657 - -
Lele47g0090 696 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 32 690 - -
Lele47g0090 696 CDD DUS_like_FMN 344 579 IPR035587 -
Lele47g0090 696 Coils Coil 82 102 - -
Lele47g0090 696 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 97 175 - -
Lele47g0090 696 MobiDBLite consensus disorder prediction 1 37 - -
Lele47g0090 696 Gene3D Aldolase class I 340 582 IPR013785 -
Lele47g0090 696 ProSiteProfiles Zinc finger C3H1-type profile. 101 132 IPR000571 GO:0046872
Lele47g0090 696 MobiDBLite consensus disorder prediction 63 88 - -
Lele47g0090 696 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 340 582 - -
Lele47g0090 696 MobiDBLite consensus disorder prediction 257 284 - -
Lele47g0090 696 ProSitePatterns Uncharacterized protein family UPF0034 signature. 428 446 IPR018517 GO:0008033|GO:0017150|GO:0050660
Lele47g0090 696 MobiDBLite consensus disorder prediction 1 106 - -
Lele47g0090 696 SMART c3hfinal6 102 131 IPR000571 GO:0046872
Lele47g0090 696 SMART c3hfinal6 142 169 IPR000571 GO:0046872
Lele47g0090 696 Pfam Dihydrouridine synthase (Dus) 347 582 IPR035587 -
Lele47g0090 696 Gene3D - 96 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0090 Lele-ChrLele47 624862 629417 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele47g0090 Dus 1.9e-49 CL0036