Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0088 ATGTCGCCGGCGGCCGCCAAGTGCAGCAAAATCCGACACATTGTTCGAATCCGACAGATGCTCCTCCGGTGGCGCAAGAAGGCGCGCATAACTGCTGTTCGAACACCGGCCGATGTGCCGGCCGGTCACGTGGCCGTCTGTGTGGGACCCAGCTGCCGGAGGTTTATTGTGCGAGCGACGTACCTGAACCATCCGGTCTTCAACAAGCTTCTGGCTCAAGCCGAAGAGGAGTACGGGTTTTGCAATCAAGGTCCCTTGACGATCCCTTGCGATGAGTCAATGTTTGAGGAGGTCCTCCGGGTCGTGTCCCGGTCTGAGTCGGGTCGCTCGTTCGGCTTCTTGAACCTCGATGATCTCCAGAGGCGCTGCCACGTGGACTTGGCTGGAGAATCCTGGCCGCTGCTTCATGAGGAGGCTATCTGTTGA 426 0.5892 MSPAAAKCSKIRHIVRIRQMLLRWRKKARITAVRTPADVPAGHVAVCVGPSCRRFIVRATYLNHPVFNKLLAQAEEEYGFCNQGPLTIPCDESMFEEVLRVVSRSESGRSFGFLNLDDLQRRCHVDLAGESWPLLHEEAIC 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0088 141 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 25 99 IPR003676 GO:0009733
Lele47g0088 141 Pfam Auxin responsive protein 16 101 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0088 Lele-ChrLele47 610322 610747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0088 6 141 Calmodulin-binding Proteins AT4G34750 53.020 1.24e-45 144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1322 45 22983792 22984731 Lele47g0088 47 610322 610747 hybridization
Lele46g1421 46 21023563 21023994 Lele47g0088 47 610322 610747 hybridization