Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0054 ATGGGAAGGTCTCCTTGTTGTGAGAAAGCCCACACCAACAAAGGCGCCTGGACCAAGGAGGAAGACGATCGCCTCATCGCTTATATCCGCGCTCACGGCGAGGGTTGCTGGCGCTCCCTCCCCAAAGCCGCCGGCCTCCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATCAACTACCTCCGTCCTGACCTCAAACGTGGCAATTTCACCGAAGAAGAAGACGAGCTCATCATCAAACTCCACAGTCTTCTCGGCAACAAGTGGTCTCTCATAGCCGGAAGATTACCGGGAAGAACAGACAATGAGATAAAGAACTACTGGAACACCCACATCAGAAGGAAGCTCTTGAACAGAGGAATCGACCCTTCCACTCACCGGCCCATGAATGAGCCCGCCAATTCTTCCCAGAACAATCAAGAAGCAGTAGCCACCACCATCTCTTTCGCCTCGCATGTCAAACAAGAGAGCAGGGATGACAACAAGGTAAACATGTTCGTGGAGCTTCACAGAGATGCAAAGAGGGGCGTAGCAGTGGAACGATGCCCTGACCTGAATCTGGAGCTAACCATTAGTCCTCCTCATCAAAACCAGGGGCCAGAGGATCAAGTTCACCAGCCAATACTCAAGAGTGGCGGAGGAAGAAGAAGCCTATGTTTCGCTTGCAGTTTAGGGTTGCAGAATAGCAAAGATTGCACCTGTGGAATTGTTGGCAACATTGATGGAAGCACCAGCGGGGGTAGTAGCACCACCGGTGGGTATGATTTCTTGGGGTTGAAAAGCTCTGTTTTGGATTACAGAAGCTTGGAGATGAAATGA 819 0.5214 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPSTHRPMNEPANSSQNNQEAVATTISFASHVKQESRDDNKVNMFVELHRDAKRGVAVERCPDLNLELTISPPHQNQGPEDQVHQPILKSGGGRRSLCFACSLGLQNSKDCTCGIVGNIDGSTSGGSSTTGGYDFLGLKSSVLDYRSLEMK 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0054 272 SMART sant 66 114 IPR001005 -
Lele47g0054 272 SMART sant 13 63 IPR001005 -
Lele47g0054 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele47g0054 272 Gene3D - 68 146 - -
Lele47g0054 272 FunFam MYB-related transcription factor 13 66 - -
Lele47g0054 272 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Lele47g0054 272 Gene3D - 14 66 - -
Lele47g0054 272 MobiDBLite consensus disorder prediction 122 141 - -
Lele47g0054 272 FunFam Myb transcription factor 68 137 - -
Lele47g0054 272 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele47g0054 272 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lele47g0054 272 CDD SANT 16 61 IPR001005 -
Lele47g0054 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele47g0054 272 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele47g0054 272 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 161 - -
Lele47g0054 272 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele47g0054 272 CDD SANT 69 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0054 Lele-ChrLele47 405460 406375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0054 1 272 MYB Transcription Factor Family AT4G38620 60.616 1.47e-113 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele47g0054 Myb_DNA-binding 3.8e-14 CL0123