Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0018 ATGGCTTTCTTCCTCGCCCTCCTCTCCCTTCTTGTTTCCTCTGCTTCTGCTTGCGATCGCTGTGTCATCCAATCCAGGACCGCCTACTTCTCTGAATCCTCTGCTCTTTCCTCCGGGGCGTGCGGGTATGGCTCCTTGGCCGTGGGAATGACCGGCGGACACCTGGCGGCAGCGGTGCCTTCTCTCTACAAAGATGGTGCCGCCTGTGGTGCCTGCTTTCAGATAAGATGCAAGAACCCGAGCTTGTGTACAAAAGAAGGGACCACCGTGGTCGTCACCGATCTCAACAAGAACAACCAAACCGATTTCGTGGTCAGCAGCAGAGCCTTCGCGGCCATGGCTAATAAGGGCATGGGTCAACAGATTTTGAAGCTCGGAATTGTGGACGTAGAATACAGGAGGGTACCGTGCGTGTACAAAAACCGGAACTTGGCGGTGCGGGTGGAAGAATCGAGCAAGAAACCGAACTACTTGGCGATTAAATTTTTGTACCAGGGCGGTCAAACGGAGATAGTGGGGGTGGATGTGGCTCAGGTGGGGTCTTCGAACTGGAGCTTCATGAGCAGGAAGAACGGGGCAATATGGGCGACAGATAGGGTACCGGCGGGGGCACTGCAGTTTCGGATGGTGGTAACGTCGGGGTATGACGGCAAATGGATATGGGCACCCAAGGTGCTGCCGGAGGACTGGAAGAGCGGCCTCATCTACGACTCCGGCGTTCAGATCACGGATATTGCAAAACAGGCCTGTTCTCCCTGCGACGATGGCTCTTGGTCATGA 780 0.5551 MAFFLALLSLLVSSASACDRCVIQSRTAYFSESSALSSGACGYGSLAVGMTGGHLAAAVPSLYKDGAACGACFQIRCKNPSLCTKEGTTVVVTDLNKNNQTDFVVSSRAFAAMANKGMGQQILKLGIVDVEYRRVPCVYKNRNLAVRVEESSKKPNYLAIKFLYQGGQTEIVGVDVAQVGSSNWSFMSRKNGAIWATDRVPAGALQFRMVVTSGYDGKWIWAPKVLPEDWKSGLIYDSGVQITDIAKQACSPCDDGSWS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0018 259 Pfam Expansin C-terminal domain 145 227 IPR007117 -
Lele47g0018 259 SMART dpbb_1 56 132 IPR007112 -
Lele47g0018 259 PRINTS Major pollen allergen Lol pI signature 214 231 IPR005795 GO:0005576|GO:0019953
Lele47g0018 259 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576|GO:0019953
Lele47g0018 259 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576|GO:0019953
Lele47g0018 259 PRINTS Major pollen allergen Lol pI signature 77 87 IPR005795 GO:0005576|GO:0019953
Lele47g0018 259 PRINTS Major pollen allergen Lol pI signature 163 178 IPR005795 GO:0005576|GO:0019953
Lele47g0018 259 Pfam Lytic transglycolase 57 132 IPR009009 -
Lele47g0018 259 SUPERFAMILY Barwin-like endoglucanases 8 140 IPR036908 -
Lele47g0018 259 FunFam Expansin-like A2 139 243 - -
Lele47g0018 259 Gene3D - 139 243 IPR036749 -
Lele47g0018 259 SUPERFAMILY PHL pollen allergen 142 238 IPR036749 -
Lele47g0018 259 PANTHER EXPANSIN-B3 11 241 - -
Lele47g0018 259 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Lele47g0018 259 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Lele47g0018 259 PRINTS Expansin/Lol pI family signature 125 141 IPR007118 GO:0005576
Lele47g0018 259 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Lele47g0018 259 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Lele47g0018 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 156 238 IPR007117 -
Lele47g0018 259 Gene3D - 6 137 IPR036908 -
Lele47g0018 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 142 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0018 Lele-ChrLele47 150663 151886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0018 15 259 Expansin Gene Family AT4G38400 66.397 4.84e-116 332