Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0011 ATGTCCAACTCCGACTCCGGTGCCGGTGCTGCTCCTTCCATAACTCCAAGCGGCACCCAGAAACACCATTGTCGAAGCAAACGAAAGAAACGAATCAGCGCCATCGATCACACCGTGGCTTTCAATCCCAAATACGCCACCAAACAACCCCACCCTGACGCGCCGATGATTACCAGGCCATGCACCGAATGCGGGAAGAAGTTCTGGTCATGGAAGGCTCTCTTCGGGCACATGCGCTGTCATCCTGAACGTCAGTGGCGCGGCATCAACCCGCCCCCCAATCTGCAACGACAACCTCCTGCGGAGAAGCACATGGCAGAATTGATGACCCCAGAAGACCACGAAATCGCGGCGGGGCTTCTGTTGCTGGCAAACTCGGAGGGGGCGGGAGCGTCGCGGTTCGAGTGCTCGAGTTGCAAGAGGGTGTTCGGGTCGAGGCAGGCTCTGGGAGGGCACAGGGCGAGCCACAAGAATGTGAAGGGGTGTTTCCGGAACGAAGAAGAAGATGAGATGGAAGGGCACAAGTGTGGGATATGCCTGAGGGTGTTTCCCAGTGGGCAGGCGCTGGGTGGCCACATGAGATGTCACTGGGACAAAGGAGAGCCTCAGGCATATTGCCTCGACCTCAATTTGCCTCCCCCTCTTCAACCTGACTCCTCCTCTCCCCTCACTCTCGATTTGAGATTGGGACTTTAA 696 0.5733 MSNSDSGAGAAPSITPSGTQKHHCRSKRKKRISAIDHTVAFNPKYATKQPHPDAPMITRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNLQRQPPAEKHMAELMTPEDHEIAAGLLLLANSEGAGASRFECSSCKRVFGSRQALGGHRASHKNVKGCFRNEEEDEMEGHKCGICLRVFPSGQALGGHMRCHWDKGEPQAYCLDLNLPPPLQPDSSSPLTLDLRLGL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0011 231 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Lele47g0011 231 MobiDBLite consensus disorder prediction 1 30 - -
Lele47g0011 231 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Lele47g0011 231 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 26 231 - -
Lele47g0011 231 ProSitePatterns Zinc finger C2H2 type domain signature. 176 196 IPR013087 -
Lele47g0011 231 MobiDBLite consensus disorder prediction 1 20 - -
Lele47g0011 231 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 161 IPR013087 -
Lele47g0011 231 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 201 IPR013087 -
Lele47g0011 231 Pfam C2H2-type zinc finger 174 199 - -
Lele47g0011 231 Pfam C2H2-type zinc finger 60 83 - -
Lele47g0011 231 Pfam C2H2-type zinc finger 133 157 - -
Lele47g0011 231 SMART c2h2final6 174 196 IPR013087 -
Lele47g0011 231 SMART c2h2final6 59 81 IPR013087 -
Lele47g0011 231 SMART c2h2final6 134 156 IPR013087 -
Lele47g0011 231 Gene3D Classic Zinc Finger 131 197 - -
Lele47g0011 231 ProSitePatterns Zinc finger C2H2 type domain signature. 136 156 IPR013087 -
Lele47g0011 231 SUPERFAMILY beta-beta-alpha zinc fingers 173 199 IPR036236 -
Lele47g0011 231 SUPERFAMILY beta-beta-alpha zinc fingers 60 156 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0011 Lele-ChrLele47 91028 91723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0011 47 231 C2H2 Transcription Factor Family AT4G35280 57.014 2.78e-76 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele47g0011 zf-C2H2_6 1.1e-11 CL0361