Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1504 ATGGAATATGGGGCCCTAGTACACAATAATTCTGCATTTGAGACCTTATCAGACAGTACTGCCTCGGTTTCAGAAGATTTCATTGACGAGCTCTTTGCACATGGCTGCTGGCTGGAAACCACTGGAGGATCATACAACCTCACGCAGCCTTGTGCTACGAATCCCCCTTCTCTCAATGACCCCAATCTGCACTATTGGACATCCTCAGACCCAAATCACCAAATCTATCAACAAGAATCAGAGGTAAGTTTTCCATTCCAAACCGAAACGGAAGTGGGCAAAAGGTGGTGGATTGGACCAAAGGAAAATCCCGGCCCATCTTCCTCAGTCAAAGAAAGATTAGTGCTTGCCGTGGGGTACCTGAGAGAATACACCAAAAATACCAATGTGTTTCTTCAGATATGGGTGCCAACGAGGAGAGAGGGAACGTACGTTCTAAACGGTGCTCACGATCACGCTCCCCCACCCTCATCCGTTGATGATCCAAACTGTAAGACTCTTGAATATTACCGAAATGTTTCCAAAGGTTATCAGTTGGCCGCCGAGGAGGAATCGGAAGAGTGTCGAGTAATCCTAGGAAAATTGCCTGATCAGTGGACCCCCACTGTTCGGTTTTTCAAAAGCCACGAGTATGCTTCATATGTGAATTATGAACAGAAGCACTACGATTTGCGTGGATCATTGGCCCTTCCCGTGTTTGAGCGAGGCAGCAGCACATGCCTTGGCGTTGTTGACATTCTAATGACCAATCACAACATCAACTATCACCCGCAAATTGACAATGTCTGCCATTCTCTACAGACAGTTGATTTTAACAAGAGTACGACTTGCCAGCACCTTATTTCTCCAGCTGTCAAGGTATTTGACGAGTTGTACCTAGCTGCACTAAATGAGATTGTGGAGGTGTCGACGTCTGTGTGCAAGACCCATAATTTGCCTTTAGCTCTCACGTGGGCGCCCTGCGGCCAACAAGGTAAGGGCGGATGTCCGAACGACAATTTCGTGGCTTGTTTGTCCACCGTGGATTCTGCTTGTTTCGTGGTGGATCTAGACTTACTTGGCTTCCAAGAAGCCTGCTCTGAGTACCACCTCCTTAGAGGGCAAGGCATTGTTGGCACCGCCTTCACCACCACCAAGCCATGCTTTGCAACCGACATAACTGCCTTCAGCAAAACTGAGTATCCTCTGTCTCACCATGCCACCATGTTTGGGTTGCATGCCGCCGTCGCTATTCCCCTCCGCAGTGTCTACACCGGATCCGCTGATTTTGTGTTGGAATTTTTCTTACCCAAGAATTGCCATGACGGCGAAGAACAAAAGCAGATGCTGAATTTATTATGTATTGTGGTACAACAGGCTTGCCGGAGTCTACATGTTGCCATGGACAAACAGATGGAGGAAGAATTCACGTTTACAGTTGGGGATATGTTGGCCGCGGCTTCCAAAGGTGGAGCCCACAAAGAAGAAACTCTTGAGTTTGGATCTTGTAATTTAGAAGAAGCGTCTTCAAAAGAATCGTCGTGGATTGCACATATGATGGAGGCTCAAACCCAACACAAGGGTAAAGGCGTGTCGGTGTCGTTGGAATACCTGGAAGAACCAAAACAAGAGTTCCAAGTGACAACCATCTGGGAAGCTAGCCACGGGGGATTCTGCAATGGGCAGACATTTTCAGATTATGGACAAGTTCACCAGAGCTCAGAAGCATCCAGAGCGAGCGTAGAGGGTGGAGGGGAATCTTACACTTTTGGTGGACGCCGCTCTTCGGGTGTCAGAAAATCAGGCGAGAAGAGACGAACCAAGGCCGAGAAGACTATCAGCTTGCCAGTTCTTCGACAATACTTTGCGGGAAGCCTTAAAGATGCTGCCAAGAGCATCGGCGTGTGTCCCACGACTCTTAAAAGGATATGCAGACAACATGGAATTACCAGATGGCCTTCAAGGAAAATAAAGAAAGTAGGACACTCGTTAAGAAAACTTCAGTTTGTGATCGATTCAGTACAAGGTGCTGAGGGCGCCATTCAGATCGGTTCCTTCTACTCCAGTTTTCCAGAGTTGAGCTCCACAAATTTGTCTCAATCGTCAAACATCAGCGACCATTCTCAGAAAGTACATGCTCGTCCCGAGCACGCTGGCTTATATGGCTACGGCGGCCCAACGTTAAAATCTCCTCCCTCTTGTTGCAGCCAGACTTCCACCATCATCAACGATGTTTTAATGGCAGAAAACCCAGAAGCGTCGCTCAAGAGAGCTCATAATCAAGTGGAAGCAGAGTTACATGAGGATACAAAACAGCAGAAAGCACTGGGCGAGCATCCTAGTGCGGAAGTTTTACCTCCGCTGCCTGAAAATAGTGGCGGTGCTTTTAGGGTGAAAGCTACTTTCGGGGATGAAAAGATTCGTTTTAGCTTGCAAGCAAAGTGGGGGTTTAGAGAACTACAACTGGAGATAGCCAGACGATTCAATCTAGAAGATCTGAGCAACATCGGTCTCAAGTATTTGGATGAGGAGGGTGAGTGGGTTCTTTTAACATGCGACGCTGATCTTGATGAGTCTAAAGACACTTATCGATCATCAAAGAGCCGTACAATGAGGTTCGCCCTGTTTCAGGCTTCGCCACTAAATCTAGCCAACACTTTTGGCAGCAACAGCTCATCCTGA 2661 0.4761 MEYGALVHNNSAFETLSDSTASVSEDFIDELFAHGCWLETTGGSYNLTQPCATNPPSLNDPNLHYWTSSDPNHQIYQQESEVSFPFQTETEVGKRWWIGPKENPGPSSSVKERLVLAVGYLREYTKNTNVFLQIWVPTRREGTYVLNGAHDHAPPPSSVDDPNCKTLEYYRNVSKGYQLAAEEESEECRVILGKLPDQWTPTVRFFKSHEYASYVNYEQKHYDLRGSLALPVFERGSSTCLGVVDILMTNHNINYHPQIDNVCHSLQTVDFNKSTTCQHLISPAVKVFDELYLAALNEIVEVSTSVCKTHNLPLALTWAPCGQQGKGGCPNDNFVACLSTVDSACFVVDLDLLGFQEACSEYHLLRGQGIVGTAFTTTKPCFATDITAFSKTEYPLSHHATMFGLHAAVAIPLRSVYTGSADFVLEFFLPKNCHDGEEQKQMLNLLCIVVQQACRSLHVAMDKQMEEEFTFTVGDMLAAASKGGAHKEETLEFGSCNLEEASSKESSWIAHMMEAQTQHKGKGVSVSLEYLEEPKQEFQVTTIWEASHGGFCNGQTFSDYGQVHQSSEASRASVEGGGESYTFGGRRSSGVRKSGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQFVIDSVQGAEGAIQIGSFYSSFPELSSTNLSQSSNISDHSQKVHARPEHAGLYGYGGPTLKSPPSCCSQTSTIINDVLMAENPEASLKRAHNQVEAELHEDTKQQKALGEHPSAEVLPPLPENSGGAFRVKATFGDEKIRFSLQAKWGFRELQLEIARRFNLEDLSNIGLKYLDEEGEWVLLTCDADLDESKDTYRSSKSRTMRFALFQASPLNLANTFGSNSSS 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1504 886 Pfam PB1 domain 789 870 IPR000270 GO:0005515
Lele46g1504 886 CDD PB1_NLP 789 870 IPR034891 -
Lele46g1504 886 PANTHER PROTEIN NLP8 61 883 IPR045012 GO:0003700
Lele46g1504 886 Gene3D - 787 873 - -
Lele46g1504 886 SMART PB1_new 788 871 IPR000270 GO:0005515
Lele46g1504 886 ProSiteProfiles RWP-RK domain profile. 592 673 IPR003035 -
Lele46g1504 886 MobiDBLite consensus disorder prediction 571 599 - -
Lele46g1504 886 SUPERFAMILY CAD & PB1 domains 782 873 - -
Lele46g1504 886 Pfam RWP-RK domain 606 653 IPR003035 -
Lele46g1504 886 ProSiteProfiles PB1 domain profile. 788 871 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1504 Lele-ChrLele46 21627538 21630730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1504 10 882 NLP Transcription Factor Family AT4G35270 44.979 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lele46g1504 PB1 8.9e-17 CL0072