LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele46g1503	ATGTCCAACTCCGACTCTGGTGCCGGTGCCTCTACTTCCACAACTCCAAGCGGCACCCAGAAACACCATTGTCGAAGCAAACGAAAGAAACGTATCACCGTCATCGACCACACCGTGGCTTTCAAGCCCAAATACTTCTCCAAACAACCCCACCCTGAGGCGCCGATGATTACCCGGCCATGCACCGAGTGTGGGAAGAAGTTTTGGTCATGGAAGGCTCTCTTCGGCCACATGCGCTGTCATCCTGAACGTCAGTGGCGCGGCATCAACCCGCCCCCCAATCTCAAACGACAACCTCCTCCGGAGAAGCAGACGCCAGAGTTCATGACCCCAGAAGACCACCAAATCGCGGCCGGGCTTCTGTTGCTGGCGAACTCGGAGGGGGCGGGAGCGTCGCGGTTCGAGTGCTCGAGTTGCAAGAGGGTGTTCGGGTCACGGCAGGCTCTGGGAGGGCACAGGGCAAGCCACAAGAATGTGAAGGGGTGTTTTGAGAACGAAGAAGATGATGAGATGGAAGGGCACAAGTGTGGGATATGCCTGAGGGTGTTTCCTAGTGGGCAGGCGCTGGGCGGGCACATGAGGTGTCACTGGGACAAAGGAGAGCCTGGTCTTCATCTTCATCATCAGGCATGTGGCCTCGACCTCAATTTCCCTCCCCCTCTTCAACCTGACTCCTCCTCTCCCCTTACTCTCGATTTGAGATTGGGACTTTAA	714	0.5672	MSNSDSGAGASTSTTPSGTQKHHCRSKRKKRITVIDHTVAFKPKYFSKQPHPEAPMITRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNLKRQPPPEKQTPEFMTPEDHQIAAGLLLLANSEGAGASRFECSSCKRVFGSRQALGGHRASHKNVKGCFENEEDDEMEGHKCGICLRVFPSGQALGGHMRCHWDKGEPGLHLHHQACGLDLNFPPPLQPDSSSPLTLDLRLGL	237

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele46g1503	237	ProSiteProfiles	Zinc finger C2H2 type domain profile.	59	86	IPR013087	-
	Lele46g1503	237	MobiDBLite	consensus disorder prediction	1	30	-	-
	Lele46g1503	237	ProSitePatterns	Zinc finger C2H2 type domain signature.	61	81	IPR013087	-
	Lele46g1503	237	SUPERFAMILY	beta-beta-alpha zinc fingers	173	199	IPR036236	-
	Lele46g1503	237	PANTHER	ZINC FINGER PROTEIN ZAT2-RELATED	27	237	-	-
	Lele46g1503	237	MobiDBLite	consensus disorder prediction	85	106	-	-
	Lele46g1503	237	ProSitePatterns	Zinc finger C2H2 type domain signature.	176	196	IPR013087	-
	Lele46g1503	237	MobiDBLite	consensus disorder prediction	1	20	-	-
	Lele46g1503	237	Gene3D	Classic Zinc Finger	131	196	-	-
	Lele46g1503	237	ProSiteProfiles	Zinc finger C2H2 type domain profile.	134	161	IPR013087	-
	Lele46g1503	237	ProSiteProfiles	Zinc finger C2H2 type domain profile.	174	201	IPR013087	-
	Lele46g1503	237	Pfam	C2H2-type zinc finger	174	199	-	-
	Lele46g1503	237	Pfam	C2H2-type zinc finger	60	83	-	-
	Lele46g1503	237	Pfam	C2H2-type zinc finger	133	157	-	-
	Lele46g1503	237	SMART	c2h2final6	174	196	IPR013087	-
	Lele46g1503	237	SMART	c2h2final6	59	81	IPR013087	-
	Lele46g1503	237	SMART	c2h2final6	134	156	IPR013087	-
	Lele46g1503	237	ProSitePatterns	Zinc finger C2H2 type domain signature.	136	156	IPR013087	-
	Lele46g1503	237	SUPERFAMILY	beta-beta-alpha zinc fingers	60	156	IPR036236	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele46g1503	Lele-ChrLele46	21613516	21614229	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele46g1503	46	237	C2H2 Transcription Factor Family	AT4G35280	55.556	1.54e-75	228

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Lele46g1503		zf-C2H2_6	1.1e-11	CL0361