Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1491 ATGGCTTTCTTCCTTGTCTTCCTCTCCCTTCTTGTTCCCTCAGCTTCTGCTTGCGATCGCTGCGTCATCCAGTCCATGGCTTCCTATTTCTCTAAATCCCCTGCTCTTTCCTCCGGGGCGTGCGGGTATGGCCCCTTGGCCATGGGATTGAGCGGCGGACACCTGGCAGCTGCGGTGCCTTCTCTCTACAAAGATGGCGCCGGCTGTGGTGCCTGCTTTCAGATGAGATGCAAGAACCCGAGTTTGTGCACAAAAGAAGGGACCACCGTGGTTGTCACCGATCTCAAGAACAACAACAACCACACTGATTTCGTGGTCAGCAGCAGAGCCTTCGCGGCCATGGCTAATAAGGGCATGAGTCAGCAAATTTTGAAGCTTGGAATTGTGGACGTTGAATACAGGAGAGTACCATGCGTGTACAAAAACCGGAACTTGGCGGTGCGGGTGGAAGAATCGAGCAAGAAACCCAACTACTTGGCCATTAAATTCTTGTACCAGGGCGGTGAAACGGAGATAGTGGGGGTGGATGTGGCTCAGGTGGGGTCTTCGAACTGGAGCTTCATGAGCAGGAAGAGTGGGGCAATATGGGCGACAGATAGGGTACCAGCGGGGGCACTGCAGTTCCGGATGGTGGTGACGTCGGGGTATGACGGCAAATGGATATGGGCACCCAAGGTGCTGCCGGAGGACTGGAAGAGCGGCCTCATCTACGACTCAGGTGTTCGGATCACCGATGTTGCAAAACAGGCCTGTTCTCCCTGCGACGATGGCTCTTGGTCATGA 783 0.5479 MAFFLVFLSLLVPSASACDRCVIQSMASYFSKSPALSSGACGYGPLAMGLSGGHLAAAVPSLYKDGAGCGACFQMRCKNPSLCTKEGTTVVVTDLKNNNNHTDFVVSSRAFAAMANKGMSQQILKLGIVDVEYRRVPCVYKNRNLAVRVEESSKKPNYLAIKFLYQGGETEIVGVDVAQVGSSNWSFMSRKSGAIWATDRVPAGALQFRMVVTSGYDGKWIWAPKVLPEDWKSGLIYDSGVRITDVAKQACSPCDDGSWS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1491 260 Pfam Expansin C-terminal domain 146 228 IPR007117 -
Lele46g1491 260 SUPERFAMILY PHL pollen allergen 143 239 IPR036749 -
Lele46g1491 260 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576|GO:0019953
Lele46g1491 260 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576|GO:0019953
Lele46g1491 260 PRINTS Major pollen allergen Lol pI signature 77 87 IPR005795 GO:0005576|GO:0019953
Lele46g1491 260 PRINTS Major pollen allergen Lol pI signature 164 179 IPR005795 GO:0005576|GO:0019953
Lele46g1491 260 PRINTS Major pollen allergen Lol pI signature 57 68 IPR005795 GO:0005576|GO:0019953
Lele46g1491 260 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576|GO:0019953
Lele46g1491 260 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Lele46g1491 260 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Lele46g1491 260 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Lele46g1491 260 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Lele46g1491 260 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Lele46g1491 260 SMART dpbb_1 56 133 IPR007112 -
Lele46g1491 260 Pfam Lytic transglycolase 57 133 IPR009009 -
Lele46g1491 260 Gene3D - 13 138 IPR036908 -
Lele46g1491 260 PANTHER EXPANSIN-B3 11 242 - -
Lele46g1491 260 Gene3D - 140 243 IPR036749 -
Lele46g1491 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 143 IPR007112 -
Lele46g1491 260 SUPERFAMILY Barwin-like endoglucanases 7 141 IPR036908 -
Lele46g1491 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1491 Lele-ChrLele46 21530985 21532343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1491 3 254 Expansin Gene Family AT3G45960 63.780 8.23e-111 318