Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1485 ATGGAAATGGCAAAAGTTGAGGGCAGCGAGATGAGTCTGGATCAGCTTCCTTCTGCTCTTCTCGCCACTATCCTCACGAAGCTCGACATCTCTTCCATCTGTTCTGTCGCCTCCACCTGCTCCGCCTTCAAGTCCTGCGCTTCTCACTTCCTCTCCTTCCTCCCCAATTTCCACCTCCTTGACATTGCACCATCTGTGGATTTGCTGAGGCCGTTGCTGCCACCGAATCCCTATCTTAGGAGCCTCAAAGTTGATTGTGCTCGGCTTGATGATTCAGCCATACCCCTTCTGGTTAAACCATCGTTGCAGGAGCTTTCTCTGCATAACTGTTCTGATTTTAGTGGGAAACTGCTTTCTGAGATAGGGAACCAATGCAGGGACCTAAGGTCTCTCTACCTGGGTTCAGTGGCCGAAAAAAGAGGGAGATCGATTCATATTTCTGATCTGGAGGAGTTGCTTAGTGGCTGCTCTCAGTTGGAAGCATTGATTCTGATGTTTGATGTCTCTCTCTTCCTGCGTCATAATTTTGCCTGTGTTTGGGCCATGGCCTCAGAGAAAATCACATCTCTTGAGATCGGCTACATATCTTCAGTAACAGTGACTGAACTTCTTAGCCCAAATTTAGGATCCCATCAGTCCCTAAATCCTGTCCAATCAAACGTATTGCCAAGAATTCAGAAGCTATGCCTTTCGGTTGACTATATAACTGATGCGATGGTTGGTACAATATCCGAAGGTCTTGTCTTTTTGACCCATTTGGACCTTCGAGATGCACCCCTCATTGAACCAAGAATCACCTTTGACCTAACCAATGCTGGCCTCCAACAAATTAATCAACATGGAAGGCTAAAACATCTGTCACTTGTCCGGAGCCAAGAGTTCCTAATTACTTACTTTCGCAGAGTAAATGATTTAGGTTTACTTTTAATGGCCGACAAGTGTGCAAATATGGAAAGCATATGCCTGGGTGGCTTTTGCCGTGTCACAGACACAGGTTTCAGAACTATCCTCCATTCATGCTCTCGCCTATACAAGCTTAAGGTCTCTCATGGGACTCAGTTAACTGATCTAGTATTTCATGATATTTCTGCCACGTCCCTTTCCTTAACTCACGTGAGCCTAAGATGGTGCAATCTATTAACCAATCATGCTGTTTTGAGCTTGGCATCAAACAAGGATCTTAAGATTCTGGACTTGAGAGACTGTAGGAGCCTCGGGGATGAAGGCCTCCGGGCCATCAGTATTCTTGCCAGACTAAAAATCCTACTGTTGGATGGCTCTGATATAACTGACACTGGGCTTTCATACTTACGCCCACGGGTTATACGTTCACTTAATGCATTGTCTCTTAGAGGGTGCAAAAGACTTACAGATAAATGCATCGCAACTCTATTTGATTGCTCTGGTCCACTGGAATTGCGAGAACTGGACGTATCCAATCTTCCCAACCTGTCTGATAATGGAGTTCTGATGCTGGCAAGAAGTCAAATTCCAATATGTGAGCTCCGGATGCGACAGTGCCCTCAAATTGGGGACACATCAGTGATGGCATTGGCATCGATGCTGGTCGACGAGGCCAGATGGTACGGAAGCAGTCTGCGGTTGCTGGATCTGTACAACTGCGGGGGAATTACGCAGCTGTCATTTAAATGGTTAAAGAAGCCATACTTCCCCAGGTTAAGATGGTTGGGAGTGACGGGAAGCGTGAATAGGGATATGGTGGATGCCTTGGCAAGAAGCAGACCTCTGCTGCATGTGGCGTGCCATGGAGAGGAACTTGGGCCCGAGCCCTACGATAGTTCTGATAGTTTATACATGCATGACTATAGGGAGGCTGATGAATTTGAGCAGTGGCTCCTCGAAGGTGAGGTTGATAGTGACGACGAAGAGATGGGTGACCCCGAAAACAATGGACTGAATCTAGAGACGCCTGTGTTATGTTGCAAAGGAAAAGCTGGGTATAATAACTTGGTTATAGAACACAAACCATATGATCAAAAGGCTGATGTGTTTAGTTTTGGAGTTGTTTTATGGGAATTGCCCACTGGAAAGCTTCCATATGAATATCTGACCCCACTACAGGCAGCAGCAATAGGTGTGTTTCAAAAGCAAGTTCCGACATTAAGACCTGATTTCTGTGAAATTATTGAGATCCTGCAGCTATTAGCTAACGAGGCATGA 2181 0.4603 MEMAKVEGSEMSLDQLPSALLATILTKLDISSICSVASTCSAFKSCASHFLSFLPNFHLLDIAPSVDLLRPLLPPNPYLRSLKVDCARLDDSAIPLLVKPSLQELSLHNCSDFSGKLLSEIGNQCRDLRSLYLGSVAEKRGRSIHISDLEELLSGCSQLEALILMFDVSLFLRHNFACVWAMASEKITSLEIGYISSVTVTELLSPNLGSHQSLNPVQSNVLPRIQKLCLSVDYITDAMVGTISEGLVFLTHLDLRDAPLIEPRITFDLTNAGLQQINQHGRLKHLSLVRSQEFLITYFRRVNDLGLLLMADKCANMESICLGGFCRVTDTGFRTILHSCSRLYKLKVSHGTQLTDLVFHDISATSLSLTHVSLRWCNLLTNHAVLSLASNKDLKILDLRDCRSLGDEGLRAISILARLKILLLDGSDITDTGLSYLRPRVIRSLNALSLRGCKRLTDKCIATLFDCSGPLELRELDVSNLPNLSDNGVLMLARSQIPICELRMRQCPQIGDTSVMALASMLVDEARWYGSSLRLLDLYNCGGITQLSFKWLKKPYFPRLRWLGVTGSVNRDMVDALARSRPLLHVACHGEELGPEPYDSSDSLYMHDYREADEFEQWLLEGEVDSDDEEMGDPENNGLNLETPVLCCKGKAGYNNLVIEHKPYDQKADVFSFGVVLWELPTGKLPYEYLTPLQAAAIGVFQKQVPTLRPDFCEIIEILQLLANEA 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1485 726 Pfam Leucine Rich repeat 390 414 IPR001611 GO:0005515
Lele46g1485 726 Gene3D Ribonuclease Inhibitor 413 594 IPR032675 -
Lele46g1485 726 SMART LRR_CC_2 392 416 IPR006553 -
Lele46g1485 726 SMART LRR_CC_2 314 339 IPR006553 -
Lele46g1485 726 SMART LRR_CC_2 470 495 IPR006553 -
Lele46g1485 726 SMART LRR_CC_2 99 124 IPR006553 -
Lele46g1485 726 SMART LRR_CC_2 530 555 IPR006553 -
Lele46g1485 726 SMART LRR_CC_2 496 521 IPR006553 -
Lele46g1485 726 SMART LRR_CC_2 442 467 IPR006553 -
Lele46g1485 726 SMART LRR_CC_2 366 391 IPR006553 -
Lele46g1485 726 Pfam Protein tyrosine and serine/threonine kinase 659 698 IPR001245 GO:0004672|GO:0006468
Lele46g1485 726 SUPERFAMILY F-box domain 6 49 IPR036047 GO:0005515
Lele46g1485 726 SUPERFAMILY Protein kinase-like (PK-like) 659 718 IPR011009 -
Lele46g1485 726 FunFam F-box/LRR-repeat protein 10 isoform A 50 466 - -
Lele46g1485 726 Pfam F-box domain 13 48 IPR001810 GO:0005515
Lele46g1485 726 SUPERFAMILY RNI-like 302 567 - -
Lele46g1485 726 Gene3D Transferase(Phosphotransferase) domain 1 653 725 - -
Lele46g1485 726 ProSiteProfiles F-box domain profile. 10 45 IPR001810 GO:0005515
Lele46g1485 726 Gene3D Ribonuclease Inhibitor 6 412 IPR032675 -
Lele46g1485 726 PANTHER UNCHARACTERIZED 15 412 - -
Lele46g1485 726 SUPERFAMILY RNI-like 65 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1485 Lele-ChrLele46 21499960 21507150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1485 658 725 MAP Kinase Kinase Kinase AT4G35780 52.747 5.93e-19 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lele46g1485 PK_Tyr_Ser-Thr 6e-06 CL0016