Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1477 ATGCTTTTGAATTTGAAAGGGAGAAGAGATGTTGTTGATGCATTATCTTGTTTCTTTTACTGGACAGCCACTGAAATCAAACTTCAAACTCAACCAGAGATTCCCATTCTCAGAAGCCATGGTTCATCACTAGATCTCAGTTCCAACCTACTCTGCCAATCTCTCTTACGCTTCAGATCAGAAGAAAAAGATAAGAGTTCAAACATGGGTGTGGCTCAAAACAATCTTGATTTGGAGGAGGGAACATTGGAGATAGGAATGGAATACAGAACTGTATCTGGTGTTGCTGGACCATTAGTCATTCTTGACAAAGTTAAGGGACCCAAATATCAAGAGATCGTTAATATTCGTTTAGGAGATGGAACTATTCGACGTGGACAAGTTCTAGAGGTTGATGGTGAAAAGGCTGTTGTTCAGGTTTTTGAAGGTACATCCGGGATTGACAATAAATTTACAACTGTGCAGTTTACTGGAGAGGTGTTGAAAACTCCTGTCTCACTGGACATGCTTGGACGCATATTTAATGGTTCTGGAAAACCTATTGATAATGGTCCACCCATATTGCCTGAGGCTTACTTGGATATATCAGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATACAGACAGGAATATCTACAATTGATGTCATGAATTCCATTGCTAGAGGTCAAAAGATCCCTCTTTTCTCAGCTGCTGGTCTTCCCCATAATGAAATTGCTGCTCAGATATGTCGCCAGGCTGGTTTAGTCAAGCGCTTGGAGAAGACTGATAATCTTCTTGAGGGCGGGGAAGAAGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAATTTTTTAAACGTGACTTTGAGGAGAATGGCTCAATGGAGAGGGTGACTCTGTTTCTTAATCTGGCAAATGATCCAACAATTGAGCGCATTATCACTCCTCGTATTGCTCTAACAACTGCTGAATATTTGGCTTATGAATGCGGGAAGCATGTTCTTGTGATACTTACAGATATGAGTTCTTATGCTGATGCTCTTCGGGAGGTATCTGCTGCTCGGGAAGAAGTGCCTGGAAGGCGTGGTTATCCGGGTTACATGTATACAGATCTTGCAACAATCTACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTTACCATGCCAAATGATGATATCACACATCCAACTCCTGATCTTACGGGATACATTACGGAGGGACAGATATACATAGATAGGCAGCTGTATAACAGACAGATATACCCACCAATCAATGTTCTTCCATCACTATCTCGGTTGATGAAGAGTGCCATTGGTGAGGGAATGACTCGAAGGGATCATTCTGATGTTTCGAACCAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCATCTGAGGATCTGCTGTATCTGGAATTTTTGGACAAGTTCGAGAGGAAGTTTGTTACCCAGGGAGCTTATGACACCCGCAACATCTTCCAGTCACTAGATCTTGCATGGACTTTGCTTCGGATCTTCCCCCGTGAGCTGCTTCATCGTATACCAGCAAAGACTCTTGACCAATATTATAGCCGAGACGCTGGTAATTAA 1671 0.4255 MLLNLKGRRDVVDALSCFFYWTATEIKLQTQPEIPILRSHGSSLDLSSNLLCQSLLRFRSEEKDKSSNMGVAQNNLDLEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTIRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAGN 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1477 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 451 IPR027417 -
Lele46g1477 556 PIRSF V-ATPsynth_beta/V-ATPase_B 80 556 IPR022879 -
Lele46g1477 556 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 88 554 IPR005723 GO:0033180|GO:0046961|GO:1902600
Lele46g1477 556 Gene3D - 97 555 - -
Lele46g1477 556 Pfam ATP synthase alpha/beta family, beta-barrel domain 92 158 IPR004100 GO:0046034|GO:1902600
Lele46g1477 556 CDD ATP-synt_V_A-type_beta_N 88 159 - -
Lele46g1477 556 Hamap V-type ATP synthase beta chain [atpB]. 86 554 IPR022879 -
Lele46g1477 556 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 73 553 IPR022879 -
Lele46g1477 556 CDD ATP-synt_V_A-type_beta_C 455 549 - -
Lele46g1477 556 FunFam V-type proton ATPase subunit B, brain 97 556 - -
Lele46g1477 556 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 215 445 IPR000194 GO:0005524
Lele46g1477 556 ProSitePatterns ATP synthase alpha and beta subunits signature. 436 445 IPR020003 GO:0005524
Lele46g1477 556 CDD V_A-ATPase_B 160 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1477 Lele-ChrLele46 21424892 21433696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1477 67 556 Primary Pumps ATPases(2) AT4G38510 96.327 0.0 969