Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1471 ATGATTGTTAAGCAGGCTGGAGGTGACATGAACACCGTCACGCAAAACCTTTCTGAGCAACTGGGGCCCCTTGTGGGTTTGAATGGCTCGGATTACTGTGTTCACTGGAAATTAAGCAAAGACCGAAGGTCTCTTTTCTGGACGGGATGCTCTTGCTCTGGAACTGAAAGTAGCAAAAATGGTGGAGACAGGCTTGTTTTCCGTGTTTCTTCAGTTGCTCCATGCAGAGATACCATGTTTCGTCACCCCAGAACAGAGTCCTGTGCTCTACTTTCTCAACTTCCGGTTTTCATTACCTTAGATTCTGGGATTCATGCAGAGACACTATCATCCAACGAATCCAAATGGTTGAATCATACCAATAGCTTAGATTCAAACACTTCTGAAGTTTTGATTCTGGTGGCCGGAGGACTAGTTGAGCTGTTTGCAACAAAGCAAGTGATCGATTTCGTCACATGCCGCTGCAAATTAGCAGTGGAGAGGGCTAAATCGAAGAACCTTGAAGCAGAGTATAAGAGGAGGGAGAGGCTCACTAAGAAATTGTCTAGTCTACGGTCTTTAGTTCCCATAGTTTCTGAGAGAGAAAGAGCGTCGATTATTGGGGACACAATTGAGTACGTGAAGGATTTGCAGAAGCAAGTGAGAGAGCTGCAAGAGGAGCTCTTGCAGCTGGAGAAAAATTCAGAAGTGGATGAACATGAAGCACCCGATAATGTTGTTGGGGTTGAAATGGGACCAATAAAAGCCGATCAAGTGGAAGTGGCGGATATAGAAGGGAATGAGTTCGACTCCATTATTACTATTGTTGCAGCTGATATGAACATCATCACGCAAAGCTTGTCACAGAGACTGAGGCCCCTTGTGGGTTTGAATGGCTGGGATTACTGTGTTCATTGGAAACTAAGCCAAGACCAAAGGTTTCTTGAATGGATGGGATGCACTTGTGCTGGGACTGAAGGTAGCCAAAATGGTGGAGAAGAACTTCTTTTCCCTGTTTCTTCAGCTGCTCCATGCAGAGATACTATGTTTCCTCATCCCACAACAAAGTCATGTGATTTACTTTCCCATCTTCCCACTTCCATAACCTTGGATTCTGGGATTCATGCAGAGACACTGTTATCCAATCAACCCAATTGGGTCAACTATTCCAATAGCTTAGACCCAAATACTTTGGAAGAAACAATTTGGACCCATGTTTTGATTCCTGTGCCTGGGGGACTAGTTGAGCTGTTTGTGACAAAGCAAGTGACGGAAGATCAACAGGTAGTCGATTTCATCACGGCCCACTGCAATATGGACATGAGCTTCGACATTGAAGTGAATTCAATCAGTCATATGCAACCGAACATGAATCCACTTTTAGGGGATGAGAATGATGCGAATACAATAGCGTCAGAGACTTCAAGTCTTCCCCCACATGATCAATGCAATTCGCCATTGAACTTGATGCAGCAATATAGCTACAGAATGAAAAGTGACGGCAATTTTGAAGATTCCCAAGGTTCATTCCTATTGAACAAAAGCCAGCAATGTGGGGAGCCTATTGAGAAGAAGGAGCAGCAAGGGGACGATAAGGATTTGATCAAACACTTGGTGGGCAGGTCAGATTCGATGTCGGATTGCAGCGATCAGAACGAAGACGAGGATGATGGCAAGTATAGGAGAAGGAACGGGAAAGGGAATCAATCGAAGAACCTTCTGGCAGAGAGGAGGAGGAGGAAGAAGCTGAATGACAGCTTGTATAATCTTCGGTCTTTGGTTCCCAGAATTTCCAAGCTAGACAGAGCGTCGATTCTCGGGGACGCAATTGAGTACGTGAAGGATTTGCAGAAGCAAGTGAAAGATCTGCAAGATGAGCTCGAGGAACATTCAGAAATGGATGAACAAGAAGCACCAGATAATGTTGTCGGCGTTGAAATGGGACCAAACTCCCATCAAATGAAGACTCAGAACGGGTTTCATGAGGGGAAATCAGGGAACGGCTTTATCTGGAAGCAAAAACAAGAGCTTGACGCTCCAAACGATAAGCAAACACAACATATGGAGCCGCAAGTGGAAGTGGCGGTGATAGAAGGGAATGAGTTGTATGTGAAGGTGTTCTGTGAGCACAGACCTGGAGGGTTCGTGAAACTGATGGAAGCATTCTACGCTCTGGGGTTCGAAGTCATGCATGCAACGGTGACTAGCCACAAAGGTCTCGTCTCCAATGTTTTCAAAGTGGAGAAGAAAGAAGATGAAATGGTGAAAGCTGAAGAGGTAAGAGAGGCATTGATGGAACTTATGAGGAACCCATGTAGAGGGTGGAATCATGAGATGAGCACAAGTGTGGCAAGGGAGTATCATCATCAGCAAGAACAAGAACAACCTCACCTTCATAACCACCACATGGCTGCGTATAATAACCCCCACCATTTACACCACATCCATACTTAG 2433 0.4517 MIVKQAGGDMNTVTQNLSEQLGPLVGLNGSDYCVHWKLSKDRRSLFWTGCSCSGTESSKNGGDRLVFRVSSVAPCRDTMFRHPRTESCALLSQLPVFITLDSGIHAETLSSNESKWLNHTNSLDSNTSEVLILVAGGLVELFATKQVIDFVTCRCKLAVERAKSKNLEAEYKRRERLTKKLSSLRSLVPIVSERERASIIGDTIEYVKDLQKQVRELQEELLQLEKNSEVDEHEAPDNVVGVEMGPIKADQVEVADIEGNEFDSIITIVAADMNIITQSLSQRLRPLVGLNGWDYCVHWKLSQDQRFLEWMGCTCAGTEGSQNGGEELLFPVSSAAPCRDTMFPHPTTKSCDLLSHLPTSITLDSGIHAETLLSNQPNWVNYSNSLDPNTLEETIWTHVLIPVPGGLVELFVTKQVTEDQQVVDFITAHCNMDMSFDIEVNSISHMQPNMNPLLGDENDANTIASETSSLPPHDQCNSPLNLMQQYSYRMKSDGNFEDSQGSFLLNKSQQCGEPIEKKEQQGDDKDLIKHLVGRSDSMSDCSDQNEDEDDGKYRRRNGKGNQSKNLLAERRRRKKLNDSLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKDLQDELEEHSEMDEQEAPDNVVGVEMGPNSHQMKTQNGFHEGKSGNGFIWKQKQELDAPNDKQTQHMEPQVEVAVIEGNELYVKVFCEHRPGGFVKLMEAFYALGFEVMHATVTSHKGLVSNVFKVEKKEDEMVKAEEVREALMELMRNPCRGWNHEMSTSVAREYHHQQEQEQPHLHNHHMAAYNNPHHLHHIHT 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1471 810 SMART finulus 566 615 IPR011598 GO:0046983
Lele46g1471 810 SMART finulus 167 216 IPR011598 GO:0046983
Lele46g1471 810 Pfam Helix-loop-helix DNA-binding domain 567 610 IPR011598 GO:0046983
Lele46g1471 810 Pfam Helix-loop-helix DNA-binding domain 164 211 IPR011598 GO:0046983
Lele46g1471 810 MobiDBLite consensus disorder prediction 532 571 - -
Lele46g1471 810 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 160 262 - -
Lele46g1471 810 SUPERFAMILY ACT-like 694 761 IPR045865 -
Lele46g1471 810 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 226 IPR036638 GO:0046983
Lele46g1471 810 MobiDBLite consensus disorder prediction 449 479 - -
Lele46g1471 810 CDD ACT_UUR-ACR-like 697 761 - -
Lele46g1471 810 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Lele46g1471 810 Coils Coil 740 763 - -
Lele46g1471 810 CDD bHLH_AtAMS_like 563 632 - -
Lele46g1471 810 Coils Coil 599 629 - -
Lele46g1471 810 Coils Coil 200 234 - -
Lele46g1471 810 Gene3D - 157 228 IPR036638 GO:0046983
Lele46g1471 810 Gene3D - 550 625 IPR036638 GO:0046983
Lele46g1471 810 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 560 609 IPR011598 GO:0046983
Lele46g1471 810 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 562 624 IPR036638 GO:0046983
Lele46g1471 810 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 17 148 IPR025610 -
Lele46g1471 810 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 280 427 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1471 Lele-ChrLele46 21392480 21398814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1471 278 774 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 49.248 1.15e-145 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele46g1471 bHLH-MYC_N 2.1e-20 CL0161