Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1467 ATGACTTATGGCACTATGTATAACTTGTGTCTTATAATACTGTTATATTTTTTCCAGAGATTAAGCATGCACTTGAGGAATATACACTCTACAGTATACAGCAACGGGACAAAGGTGAACTTGTGTGTCGTACCTTGTTGTCTAATTCACAATGCACCCACGTACTATGTGGTCTCATCACCTTCCATATTCTTTAAAGTGATGTTGGAGGTTGGGTCGACCGATGACAGCCCTTATTTTCCTCAACGGTTTCTTGCGGAAGCCATCGTTCAGGCCGAGATGTCGAAGGAAGTGAGCGAAGAAGGCCAAACCCACCACCATGGCAAAGACTACGTCGACCCCCCACCGGCTCCTCTCATTGACATGGCCGAGCTCAAGCTCTGGTCCTTCTACAGGGCCCTCATCGCCGAGTTCATCGCGACCCTCCTCTTCCTCTACATCACCGTCGCCACCGTCATCGGTCACAAAAAGCAGAGCGGCCCCTGCGATGGTGTGGGTCTCCTCGGCATCGCCTGGGCCTTCGGTGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGTATCTCTGGTGGCCACATCAATCCTGCAGTCACATTTGGGTTGTTCTTGGCGAGGAAGGTGTCACTCATCCGAGCTTTGGCGTACATGGTGGCTCAGTGCCTGGGTGCAATTTGCGGTACTGGGTTGGTGAAGGCGTTCATGAAGCACTCGTACAACTCACTCGGCGGTGGAGCTAACGAAGTGAACTCCGGCTACAGAAAAGGCACCGCTCTCGGCGCCGAGATTATCGGCACCTTTGTTCTGGTCTACACCGTCTTCTCCGCGACCGACCCCAAGAGAAGCGCCCGTGACTCCCATGTTCCTGTTTTGGCTCCATTGCCAATTGGATTTGCTGTTTTCATGGTTCACCTGGCTACCATCCCCATCACTGGCACAGGGATAAACCCCGCGAGGAGCTTGGGTGCTGCTGTTATCTACAACAACGACAAAGCTTGGGACGACCACTGGATCTTCTGGGTTGGTCCATTTGTGGGAGCATTGGCGGCGGCGGCGTATCATCAGTATATTCTGAGAGCAGCGGCCATTAAGGCATTGGGATCGTTCAGAAGCAACACCAGCAACTAA 1125 0.5271 MTYGTMYNLCLIILLYFFQRLSMHLRNIHSTVYSNGTKVNLCVVPCCLIHNAPTYYVVSSPSIFFKVMLEVGSTDDSPYFPQRFLAEAIVQAEMSKEVSEEGQTHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFIATLLFLYITVATVIGHKKQSGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRALAYMVAQCLGAICGTGLVKAFMKHSYNSLGGGANEVNSGYRKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNTSN 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1467 374 ProSitePatterns MIP family signature. 192 200 IPR022357 -
Lele46g1467 374 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 97 363 IPR034294 -
Lele46g1467 374 SUPERFAMILY Aquaporin-like 123 358 IPR023271 -
Lele46g1467 374 TIGRFAM MIP: MIP family channel proteins 136 352 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele46g1467 374 Pfam Major intrinsic protein 125 352 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele46g1467 374 PRINTS Major intrinsic protein family signature 211 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele46g1467 374 PRINTS Major intrinsic protein family signature 132 151 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele46g1467 374 PRINTS Major intrinsic protein family signature 174 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele46g1467 374 PRINTS Major intrinsic protein family signature 296 318 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele46g1467 374 PRINTS Major intrinsic protein family signature 336 356 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele46g1467 374 PRINTS Major intrinsic protein family signature 260 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele46g1467 374 FunFam Probable aquaporin PIP1-2 117 372 - -
Lele46g1467 374 Gene3D Glycerol uptake facilitator protein. 117 374 IPR023271 -
Lele46g1467 374 CDD MIP 132 356 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1467 Lele-ChrLele46 21371270 21375383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1467 94 374 Major Intrinsic Protein MIP AT4G35100 90.391 0.0 525