Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1459 ATGGCTTCCAAGAGAATTCTGAAGGAGCTCAAAGACTTGCAGAGAGACCCCCCAACGTCATGCAGTGCAGGTCCTGTTGGAGAAGACATGTTCCATTGGCAAGCAACCATCATTGGTCCTAATGACTGTCCCTATGCTGGTGGTGTTTTCCTTGTTAACATCCATTTTCCTCCTGATTATCCCTTCAAGCCTCCCAAGGTTGCATTCAGGACCAAGGTATTCCATCCCAATATAAACAGTAATGGAAATATTTGTCTGGACATTCTCAAAGAGCAATGGAGCCCTGCCCTCACCATATCCAAGGTTTTGCTGTCAATTTGTTCACTGCTAACGGATCCAAACCCGGATGACCCGCTTGTTCCAGAGATTGCTCATATGTGCAAGTCTGACAAACAGAAGTATGAGTCGACTGCTAGAGGATGGACCCAGAAACCTTTTGCATCTTCACAAATTCCACAGAATGAGATGATTCGTTCAGGAACAGGGAAGATTATCTTTGCAGGAGTTCGGCGAATTCAAAGAGGAATAGAATTCATAGCTATTCTGGGATTTGAAAGGCGATTTGATCCAGAAGAGCAAAACACAACAATGACTGCTGAGAGGGGAAATGTGTTGGTGGGGACTAGAATCGATAACGAAAGCAGGCAGCTTCTAAACTGGGCTCTTGTCATGGTTGCTCAACCTGGAGATTGCGTTGTTGCAGTTCATGTGGTCATGTTTCAAAAACCAATATCTAGAGGTTTACGATGGCCTATGTCATGTGAAAAAAGTAATGGTGGTGCTGCCACAGCTAAACATTGTGCCAAACGACTCCCACCCACCACAGATGTTGTAGCCATTCAGGATGGAAGAATGGTCTTCAGAAGGCCTAGTCTCACAAGCATGGACGACAAAGAATTCCTGTCTGAATTTGGAGACTCCGAGGTTGGCACTGTGAAGTCAATATGTTGTGAGGAGACAAGAGAAGATGTCCCAGAATTGAACAAAGAAGTATTTGACGGTGTTAAAGGGAGCAAGAAAGTGTGTCCAAGAGCAATCTCTCTGTTTGTAGGTGACCCTTAAACTCTCTCACAAAGAGGCATCAGTGATGTTGAGGATGACAAACAGAAAAACAGTTCATGTTCTTCATCTTTTGAGCTACCAAAGGAATTGGAGGGGATTTTGGACGTGAATTCCTTTGATTTCAAGTGGTTTAACTTTGAGGATCTCAAGTCCTGGACTTCTCATTTCTCTTCAGGTCTAATCATCTTAGAAGTTTTCAGATGTTTTCTGAGCGTTTTCCTTGTTCTTCTGTGCTTCAGACCTGAACTTGAATTTTCCATTGCAGGAAATCTGGTTGGTAAAGGAGGGAGTAACCGTGTGTACAAAGGGATTATCCCTGATGGAAAACCAATTGCAGTCAAAGTTTTAGAGTCATCAAAAGAAGCTTGTAAAGATTTTGCACAGGAAGTGGAAATAATATCCTCTTTGAGGCACAAATACATAACCCCATTGCTTCGAATTTGCATTGCAGAAGATGCTTTAATCTCTGTCTACGAGTTTTTCCCCAAAGGAAGCTTAGAGGAAAATTTACACGGTGAGAACAAGGATGGATCCACAATGTCATGGCAAGTTAGATTTAATATGGCAGTTGGTATAGCAGAAGCCCTCAATTACCTTCACAACGAAACTTCAAAGCCTGTTATACACAGGGATGTTAAGTCTTCAAATGTTCTTCTCTCCCATGGGTTTGAACCACAAATACTGAAGATCCTGCAAGGAGAAGAAAAAGGCGAGGGTTTGTGGAGCTCACAAGGGTTTGATGATGAGCATACAGAAAACCAGGAGAACATAGACGACGAAGTGTGTCCAAATTCAAGTGCAGAGTTACATCTAAGTCTTGCGTTACTTGATGTTGATGATGAATCTGCATCATAA 1917 0.4267 MASKRILKELKDLQRDPPTSCSAGPVGEDMFHWQATIIGPNDCPYAGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKSDKQKYESTARGWTQKPFASSQIPQNEMIRSGTGKIIFAGVRRIQRGIEFIAILGFERRFDPEEQNTTMTAERGNVLVGTRIDNESRQLLNWALVMVAQPGDCVVAVHVVMFQKPISRGLRWPMSCEKSNGGAATAKHCAKRLPPTTDVVAIQDGRMVFRRPSLTSMDDKEFLSEFGDSEVGTVKSICCEETREDVPELNKEVFDGVKGSKKVCPRAISLFVGDPXTLSQRGISDVEDDKQKNSSCSSSFELPKELEGILDVNSFDFKWFNFEDLKSWTSHFSSGLIILEVFRCFLSVFLVLLCFRPELEFSIAGNLVGKGGSNRVYKGIIPDGKPIAVKVLESSKEACKDFAQEVEIISSLRHKYITPLLRICIAEDALISVYEFFPKGSLEENLHGENKDGSTMSWQVRFNMAVGIAEALNYLHNETSKPVIHRDVKSSNVLLSHGFEPQILKILQGEEKGEGLWSSQGFDDEHTENQENIDDEVCPNSSAELHLSLALLDVDDESAS 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1459 638 Pfam Ubiquitin-conjugating enzyme 5 139 IPR000608 -
Lele46g1459 638 Gene3D Phosphorylase Kinase; domain 1 438 514 - -
Lele46g1459 638 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
Lele46g1459 638 SUPERFAMILY UBC-like 2 145 IPR016135 -
Lele46g1459 638 Pfam Protein kinase domain 444 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele46g1459 638 FunFam Ubiquitin-conjugating enzyme 28, E2 1 148 - -
Lele46g1459 638 Gene3D Transferase(Phosphotransferase) domain 1 515 585 - -
Lele46g1459 638 PANTHER OS08G0249100 PROTEIN 329 581 - -
Lele46g1459 638 ProSiteProfiles Protein kinase domain profile. 440 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele46g1459 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 561 573 IPR008271 GO:0004672|GO:0006468
Lele46g1459 638 SMART serkin_6 440 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele46g1459 638 CDD USP_Like 203 238 - -
Lele46g1459 638 SMART ubc_7 4 147 - -
Lele46g1459 638 CDD UBCc 3 142 IPR000608 -
Lele46g1459 638 SUPERFAMILY Protein kinase-like (PK-like) 442 581 IPR011009 -
Lele46g1459 638 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Lele46g1459 638 Gene3D Ubiquitin Conjugating Enzyme 1 144 IPR016135 -
Lele46g1459 638 MobiDBLite consensus disorder prediction 594 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1459 Lele-ChrLele46 21323889 21333560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1459 445 581 Receptor kinase-like Gene Family AT5G56890 43.478 5.06e-30 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lele46g1459 Pkinase 4e-22 CL0016