Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1443 ATGTCGAGCATCGTCAAGGAGATCCTGGCGAGCCCGATACAGATGGCGGACCAGGTGGTCAAGCTGGCCGACGAAGCCCAAACATTCAGAATAGAATGTTTAGAGGTCAAGGCCAAGACGGAGAAACTCGTTGCCTTACTCCGGCAAGCCGCGAGGGCTAGCAACGACCTCTACGAGCGGCCGACACGGCGCATCATCGACGACACGGAACAAGTCCTCGAGAAGGCCTTGCAACTGGTCGACAAATGCCGCGGAAACGGCCTCATGAAACGACTCTTCACCATCATACCCGCGACGGCGTTTCGCAAGACGTCGATGCAGCTCGAGAATTCCCTCGGAGACGTACAATGGCTCCTTCGTGTATCTATCTCCGCCGACGAACGCGACGACGAGTATCTTGGTCTGCCCCCAATTGCCGCCAACGAGCCCATTTTGTGTCTAATCTGGGAACAGATAGCCATATTGCTCACGGCGTGTTCCTTGGAAGATCGCTCAGACGCTGCCGCTTCCTTGGTCTCTCTGGCTCGAGACAACGACAGGTACACCAAATTGATTATTGAGGAGGGTGGTGTTCCTCCCCTTTTGAAATTGTTGAAAGAAGGGCATTTAGAGGGTCAGGAAAATGCAGCGAGAGCGATTGGGTTGCTTGGGAAAGACCCAGAAAGCGTGGAACAGATTGTGAATGCTGGGGTTTGCACAGTGTTTGAGAAAGTCCTCAAAGAAGGTGACATGAAGGTTCAATCAACGGTGGCTTGGGCTATCTCGGAATTGGCATATCATCATCCAAAATGTCAGGATCACTTTGCTCAGAACAATTGCATTCGCTTGCTCGTAAGGCATCTTGCCTTTGAGACCATCCAGGAACACAGTAAATATACCATTCCCACAAAACAAAACATGTCGTCGATTCATTCAATCGTGATGGCCAGTAACGCTCAGAACCAGAACGATCATGAAGATCATAATCAGATTACTCGACCTTCGGGGAACCAAGCATCGAGTCAAATGAGCAATGTAGTTACCAACACAATGGCCATGAAACAACAACCACCACATCAGGGCGGCAACTCAAATAAGCATGGACACGCGCATGTTTCAATTGCAGGGACGAGTATCAAGGGGAGGGAAGCTGTGGATCCAGTTACAAAGGCACAAATGAAGGCCTTGGCGGCGAAATCACTGTGGCAACTCGCAAGAGGGAATGTTACCGTGTGTCGCAGCATCACTGAATCAAGGGCTCTTCTATGTTTTGCTGTTCTGTTGGAGAAGGGACCTGAGGATGTTAAATCGTTTTCAGCTTTTGCTTTAATGGAGATCACGGCGGTGGCAGAGCAACACGCAGAGTTGAGACGTTCTGCGTTCAAACCGAATTCGCCGGCTGCAAAAGCGGTGTTGGATCAGCTTCTTAGGATCATTGTGAAAGGGGAATCTGATCTTATGATACCATGCGTAAGATCAATAGGGCACTTGGCAAGGACTTTCAGAGCAACAGAAACAAGAATCATAGGACTGTTGGTGAGTCTGCTTGAGGAAGGAGATGTGGACGTTTCAGTTTCAAGGGAAGCGGCAATTGCACTGACGAAGTTTGCTTGCACTGAGAACTTTCTGCACGAGACTCACTGCTCAGCCATAATAGAAGCAGGAGGAGCAAAGCACTTGCTTCAAATCGTTTACTTTGGGGAGCTAGCGATCCAAATTCCTGCGCTGAAACTTCTGTGTTATGTGGCAATGCACGTTCCTAAAAGTGAGACGCTCGCCCATGAAGGTAATGCCCTCACAATTCTGGAGTGGTCTATGAAGCAGCAGAACCTGATCCAAGAACCGACCGTTGAAGAGCTTGTAGTCGAAGCCAAGAGTAGATTGGAACTGTATCAATCAAGGGGTACAAGAGGATTCCACTGA 1902 0.4947 MSSIVKEILASPIQMADQVVKLADEAQTFRIECLEVKAKTEKLVALLRQAARASNDLYERPTRRIIDDTEQVLEKALQLVDKCRGNGLMKRLFTIIPATAFRKTSMQLENSLGDVQWLLRVSISADERDDEYLGLPPIAANEPILCLIWEQIAILLTACSLEDRSDAAASLVSLARDNDRYTKLIIEEGGVPPLLKLLKEGHLEGQENAARAIGLLGKDPESVEQIVNAGVCTVFEKVLKEGDMKVQSTVAWAISELAYHHPKCQDHFAQNNCIRLLVRHLAFETIQEHSKYTIPTKQNMSSIHSIVMASNAQNQNDHEDHNQITRPSGNQASSQMSNVVTNTMAMKQQPPHQGGNSNKHGHAHVSIAGTSIKGREAVDPVTKAQMKALAAKSLWQLARGNVTVCRSITESRALLCFAVLLEKGPEDVKSFSAFALMEITAVAEQHAELRRSAFKPNSPAAKAVLDQLLRIIVKGESDLMIPCVRSIGHLARTFRATETRIIGLLVSLLEEGDVDVSVSREAAIALTKFACTENFLHETHCSAIIEAGGAKHLLQIVYFGELAIQIPALKLLCYVAMHVPKSETLAHEGNALTILEWSMKQQNLIQEPTVEELVVEAKSRLELYQSRGTRGFH 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1443 633 FunFam Armadillo repeat only 4 2 121 - -
Lele46g1443 633 PANTHER ARMADILLO REPEAT ONLY 4 1 629 - -
Lele46g1443 633 Coils Coil 36 56 - -
Lele46g1443 633 FunFam Armadillo repeat only 2 150 322 - -
Lele46g1443 633 Gene3D - 3 121 IPR036537 GO:0007166
Lele46g1443 633 Gene3D - 150 324 IPR011989 -
Lele46g1443 633 Gene3D - 370 620 IPR011989 -
Lele46g1443 633 Pfam Armadillo/beta-catenin-like repeat 178 214 IPR000225 GO:0005515
Lele46g1443 633 MobiDBLite consensus disorder prediction 314 336 - -
Lele46g1443 633 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 189 231 IPR000225 GO:0005515
Lele46g1443 633 SUPERFAMILY ARM repeat 155 595 IPR016024 -
Lele46g1443 633 SMART arm_5 219 259 IPR000225 GO:0005515
Lele46g1443 633 SMART arm_5 177 218 IPR000225 GO:0005515
Lele46g1443 633 SMART arm_5 537 577 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1443 Lele-ChrLele46 21217096 21219124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1443 156 258 U-box Gene Family AT1G71020 34.615 7.07e-06 47.0