Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1442 ATGGCTTCCTCTGCCTCTGCATCTCTGTACGACGTGCTCGGGATCTCAACGGGTGCTAGCGGCAACGAGATAAAATCTGCTTACAGGAAGCTTGCGAGAACGTGTCATCCTGACGTGGTGGCCATGAATCAGAAGGAAACCTCGGCCAACGAGTTCATGAAGATCCATTCGGCTTATTCCACGTTGTCGGATCCCAGCAAGCGAGCTCAATATGACAGACAACTCTATGGCCATAATCACAGAAGGCCTCTTACTTCTTCAAATATAGCTTCTATGTCTGGGCATCGTCCTAGATATGCTCACTCTGGAATGAGCTGGGAGACTGATCAGTGCTGGTAG 339 0.4985 MASSASASLYDVLGISTGASGNEIKSAYRKLARTCHPDVVAMNQKETSANEFMKIHSAYSTLSDPSKRAQYDRQLYGHNHRRPLTSSNIASMSGHRPRYAHSGMSWETDQCW 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1442 112 MobiDBLite consensus disorder prediction 77 100 - -
Lele46g1442 112 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 3 102 - -
Lele46g1442 112 CDD DnaJ 10 64 IPR001623 -
Lele46g1442 112 Pfam DnaJ domain 9 72 IPR001623 -
Lele46g1442 112 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Lele46g1442 112 PRINTS DnaJ domain signature 28 43 IPR001623 -
Lele46g1442 112 PRINTS DnaJ domain signature 10 28 IPR001623 -
Lele46g1442 112 PRINTS DnaJ domain signature 47 67 IPR001623 -
Lele46g1442 112 SUPERFAMILY Chaperone J-domain 5 78 IPR036869 -
Lele46g1442 112 SMART dnaj_3 7 67 IPR001623 -
Lele46g1442 112 Gene3D DnaJ domain 2 93 IPR036869 -
Lele46g1442 112 ProSiteProfiles dnaJ domain profile. 8 75 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1442 Lele-ChrLele46 21207875 21208213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1442 1 72 C2H2 Transcription Factor Family AT1G74250 43.038 4.58e-11 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele46g1442 46 21207875 21208213 Lele47g0066 47 471179 471673 hybridization
Lele46g1442 46 21207875 21208213 Lele48g0070 48 1176143 1176640 hybridization