Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1421 ATGTCGCCGGCGGCCGCCAAGTGCAGCAAAATCCGACACATTGTCCGAATCCGCCAGATGCTTCTCCGGTGGCGCAAGAAGGCGTGCATAACTGCCGTTCGAACACCGTCCGATGTACCGGCCGGTCATGTGGCCGTCTGTGTGGGACCCAGCTGCCGAAGGTTTATCGTTCGAGCGACATACTTGAACCACCCGGTCTTCAACAAGCTTCTGGCTCAAGCCGAAGAGGAGTATGGGTTCTGCAATCAAGGTCCCTTGACGATCCCTTGCGACGAGTCCATGTTCGAGGAGGTCCTCCGGGTTGTGTCCCGGTCCCGGTCCGAGTCGGGTCCTTCGTTCCGCTTTTTGAACCTCGATGATCTCCAGAGGCGCTGCCACGTGGACTTGGCGGGAGAATCCTGGCCGTTGCTTCATGAGGAGGCCATATGTTGA 432 0.5856 MSPAAAKCSKIRHIVRIRQMLLRWRKKACITAVRTPSDVPAGHVAVCVGPSCRRFIVRATYLNHPVFNKLLAQAEEEYGFCNQGPLTIPCDESMFEEVLRVVSRSRSESGPSFRFLNLDDLQRRCHVDLAGESWPLLHEEAIC 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1421 143 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 28 99 IPR003676 GO:0009733
Lele46g1421 143 Pfam Auxin responsive protein 17 101 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1421 Lele-ChrLele46 21023563 21023994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1421 6 143 Calmodulin-binding Proteins AT4G34750 53.020 3.24e-43 138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele46g1421 46 21023563 21023994 Lele47g0088 47 610322 610747 hybridization
Lele46g1421 46 21023563 21023994 Lele48g0092 48 1340660 1341028 hybridization