Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1419 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAATTCCAGCCTCTGTAAAACAAAGCTTTCAGACCCATATACTTGTTTTACTGTTGTCCGAGTCGCCTCGTCCCGATATGGACGAGTCTGTGACTGTGACAAAGACCGTACCAGGTTCCGAGGTGTTGGAGGGGGAGCAACCTTCGTCCAACTCGAATGGGTTAACTCAGCAAACGCCGGAGCAACTCGTGGCCAGTGCCATAGCTCCTGTGAAGGCGGAGTTCCTTCGTCCTCCTCCTGTTAGAACTTCCTCCACAACCCAGAACATAGATGTTTCTGAAGACAAGGACAAGGCCGCTGTTCAATCCGGCGGATTGGTGAAGGAGAAGAAGTCCAAGCGCCAACTCAAGCGTGAACGTCGTCAGGAACAGAAGTCTGCTAAAAACATTTGTCCGGAAATTGCAAAGACAGGAGATATTAGTTCATGTCCTTACAAAGATAAATGCCGCTTCAGCCATGACTTAGAAGCCTTCAAGGCCCAGAAACCAACTGATTTAGAGGGAGAATGCCCTTTTTTTAAAGCTGAAGGTTCTTGTCCCTATGGATTAGCATGTAGATTTTCCAGCACGCATACAGAAGGCATGCCTTCTGAAAATCTGAATGATCGGAGAAAAACTTCTGAAATAAATGGACTGAGCAAAGATGTTCAAAAGCTTTTATGGAAAAATAAGATGCGCTTCCCCAACGCAGATGCCAACCTTAAAGCTCTTGGACTTTGGGAATCATCTAAGTTAAAACGGAACAACTTAGAAGATAAGGAGGGTGGCAACGTTGATTCAAATGATTGCCACAATGCTGATAATAATGGCTCTTGTGAAGTTACCAATGACTTGGGTTCTAACTTAGAAAGCTCTGCTGAGGACGCAAAATTTGATGGTGTTGATGGAAATTTAGATTCTGATTCCCCTTGCCCTCAAAAGAGAAGGAGAACTGAAGAAAATTCTGGCCTTGATGCGGCAGAAAATGAAGGTGTGTGTGCTGCTGACGATAACATTAAAAAAAGCTGCATACAAGCTGAACTTGCTGCAGTAACTGATGTCATACCCCCTGAAACTGATCAAAGCATGAAGTTACACCCACGAGAAAAGAAGCTTATTGATTTTAGAAATAAGTTGTATCTTGCGCCCTTGACCACTGTGGGGAATCTACCATTCAGGAGGGTTTGCAAAGTATTAGGAGCTGATGTGACGTGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCATCAGAATGGGCATTGCTGAGACGTCATTTATCTGAAGATTTATTCGGCGTGCAAATATGTGGGGCATATCCAGACACCATTGCACGAACTGTAGAACTGATAGAGAAGGAATGTACAATAGATTTTGTTGATATAAATATGGGTTGCCCAATTGATATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTTACAAAACCAATGCGGATGAAAAGTATTATAGAGGTAGCTTCAGGCACAGTGGAGAAACCAATAACTATCAAGGTGCGAACAGCTTATTTTGAAGGGAAAAATCGTGTCGATTCTATTATTGCGGACATGGGCTCTTGGGGAACTAATGCAGTAACGATACATGGTAGATCACGTCAGCAACGATACAGCAAGCTTGCTGACTGGGACTATGTCTACCAATGTGCCAGGAAGGCCCCTAGTACTTTGCAAGTAGTGGGGAATGGTGATATTTTTTCATTTGTTGACTGGAACAAACAAAAGGCTGAATGCTCTGAGCTTGCTACATGCATGATTGCTCGTGGAGCACTGATTAAGCCTTGGATATTTACAGAAATCAAGGAACAAAGGCACTGGGACATTAGTTCTGGGGAGCGATTTAATATTTTGAAAGATTTTGTACATTTTGGCCTTGAGCACTGGGGTTCTGACACAAAAGGAGTGGAGATAACCAGACGGTTTTTATTGGAATGGCTTAGCTACACATGTAGATATATACCTGTTGACCTATTAGATGTTATTCCACAAAGATTAAACTGGCGTCCGCCATCTTACTACGGACGTGATGACCTTGAGACACTAATGGCTTCAGACTCTGCAGCTGACTGGATACGAATATCAGAGATGTTACTTGGCAAGGTTCCAGATGGCTTTTCATTTACGCCAAAGCATAAATCAAATGCTTACGACAGTGCTCAGAATGGCTGA 2199 0.4357 MAEWSKAPDSIPASVKQSFQTHILVLLLSESPRPDMDESVTVTKTVPGSEVLEGEQPSSNSNGLTQQTPEQLVASAIAPVKAEFLRPPPVRTSSTTQNIDVSEDKDKAAVQSGGLVKEKKSKRQLKRERRQEQKSAKNICPEIAKTGDISSCPYKDKCRFSHDLEAFKAQKPTDLEGECPFFKAEGSCPYGLACRFSSTHTEGMPSENLNDRRKTSEINGLSKDVQKLLWKNKMRFPNADANLKALGLWESSKLKRNNLEDKEGGNVDSNDCHNADNNGSCEVTNDLGSNLESSAEDAKFDGVDGNLDSDSPCPQKRRRTEENSGLDAAENEGVCAADDNIKKSCIQAELAAVTDVIPPETDQSMKLHPREKKLIDFRNKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHLSEDLFGVQICGAYPDTIARTVELIEKECTIDFVDINMGCPIDIVVNKGAGSALLTKPMRMKSIIEVASGTVEKPITIKVRTAYFEGKNRVDSIIADMGSWGTNAVTIHGRSRQQRYSKLADWDYVYQCARKAPSTLQVVGNGDIFSFVDWNKQKAECSELATCMIARGALIKPWIFTEIKEQRHWDISSGERFNILKDFVHFGLEHWGSDTKGVEITRRFLLEWLSYTCRYIPVDLLDVIPQRLNWRPPSYYGRDDLETLMASDSAADWIRISEMLLGKVPDGFSFTPKHKSNAYDSAQNG 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1419 732 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 130 210 - -
Lele46g1419 732 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 376 618 - -
Lele46g1419 732 Coils Coil 115 135 - -
Lele46g1419 732 SUPERFAMILY FMN-linked oxidoreductases 379 693 - -
Lele46g1419 732 MobiDBLite consensus disorder prediction 84 139 - -
Lele46g1419 732 CDD DUS_like_FMN 380 615 IPR035587 -
Lele46g1419 732 Gene3D - 129 216 - -
Lele46g1419 732 MobiDBLite consensus disorder prediction 100 121 - -
Lele46g1419 732 Gene3D Aldolase class I 375 618 IPR013785 -
Lele46g1419 732 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 67 726 - -
Lele46g1419 732 ProSiteProfiles Zinc finger C3H1-type profile. 178 203 IPR000571 GO:0046872
Lele46g1419 732 ProSiteProfiles Zinc finger C3H1-type profile. 134 165 IPR000571 GO:0046872
Lele46g1419 732 MobiDBLite consensus disorder prediction 297 326 - -
Lele46g1419 732 ProSitePatterns Uncharacterized protein family UPF0034 signature. 464 482 IPR018517 GO:0008033|GO:0017150|GO:0050660
Lele46g1419 732 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 178 197 IPR000571 GO:0046872
Lele46g1419 732 MobiDBLite consensus disorder prediction 311 326 - -
Lele46g1419 732 SMART c3hfinal6 135 164 IPR000571 GO:0046872
Lele46g1419 732 SMART c3hfinal6 175 202 IPR000571 GO:0046872
Lele46g1419 732 MobiDBLite consensus disorder prediction 36 68 - -
Lele46g1419 732 Pfam Dihydrouridine synthase (Dus) 383 629 IPR035587 -
Lele46g1419 732 MobiDBLite consensus disorder prediction 30 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1419 Lele-ChrLele46 21002416 21007773 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele46g1419 Dus 3e-48 CL0036