Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1401 ATGAAGATCCAATGCGATGTTTGTGAGAAAATGGAAGCTTCAGTGTTCTGTTCTGCAGACGAAGCTGCTCTCTGCCATGGCTGTGATTCAAGCATCCACCACGCCAACAAGCTCGCAGGCAAACACATACGCTTCTCTCTTCACCATCCCACCTCTAAAGATTCCCCTCTCTGTGATATCTGCCAAGAGAAGCGAGCGTATCTGTTTTGCAAAGAAGACAGAGCAATACTTTGCAGAGAATGTGACCTTAACATTCACAGAGCCAACGAACATACCCAGAAACACAATAGGTTTCTCCTTACAGGCGTGAAGCTTTCTGATTCTTCTTCTTCTGGGGACCCATCTTCATCTTCCTGCGATGCCATAACCACAGAGCATAATAATAATAAAAGATTCGATAATGGAGGTCGTGAACGAAGAAGATCGTGTCGGAATTCTAATAACACAAACAGAGCCACAACATGGGATTGCAGCAATGAGAATTTCAGTTCTTCGAATTCAGTTGTGAATTCTGATACTATGGTTAGTGACACAGAAGCAGTTTCAACGAGCAGTTTTTCTGAGTATTTGATTGAGACGATACCTGGGTTTTGCTTTGAAGACCTAATCGATGATTCGTTTCGTTCTCACTGTAAGAATGGGGATGAGCATGATTCAACATTTGATGATGAATATGAGGAGGAGGATGTTCAAGTTAGAATGTGTTTATATCCAAAAGCAAACGCAGCAAAAGAAATCTGGAAATGGAAGCAAAATGGCTTTCACTAA 768 0.4193 MKIQCDVCEKMEASVFCSADEAALCHGCDSSIHHANKLAGKHIRFSLHHPTSKDSPLCDICQEKRAYLFCKEDRAILCRECDLNIHRANEHTQKHNRFLLTGVKLSDSSSSGDPSSSSCDAITTEHNNNKRFDNGGRERRRSCRNSNNTNRATTWDCSNENFSSSNSVVNSDTMVSDTEAVSTSSFSEYLIETIPGFCFEDLIDDSFRSHCKNGDEHDSTFDDEYEEEDVQVRMCLYPKANAAKEIWKWKQNGFH 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1401 255 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Lele46g1401 255 MobiDBLite consensus disorder prediction 105 125 - -
Lele46g1401 255 MobiDBLite consensus disorder prediction 105 147 - -
Lele46g1401 255 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lele46g1401 255 MobiDBLite consensus disorder prediction 126 145 - -
Lele46g1401 255 CDD Bbox1_BBX-like 5 47 - -
Lele46g1401 255 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 223 - -
Lele46g1401 255 Gene3D Classic Zinc Finger 1 99 - -
Lele46g1401 255 CDD Bbox1_BBX-like 57 100 - -
Lele46g1401 255 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Lele46g1401 255 FunFam B-box zinc finger protein 21 1 98 - -
Lele46g1401 255 SMART bboxneu5 53 100 IPR000315 GO:0008270
Lele46g1401 255 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1401 Lele-ChrLele46 20842704 20844340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1401 1 216 C2C2-CO-like Transcription Factor Family AT1G75540 48.636 5.89e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele46g1401 zf-B_box 2.1e-08 No_clan