Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1398 ATGAGTTCGACGGCGGTGTTTTGGTGTGTTCGGGTGCGTTCTGAGGATGATACGGTTGACGAATACGCATATCAAACGTCTGTGAATATAGGAGGACGTATGTTCAGTGGTGTTCTTTATGATCAAGGTCCTGAAACTGAAAGATTCTACTACAACAACGTTGCTCAAAGTTCTAAAGGCCCCCTGAATCTGATTCATCATCCTCCTCATGATCATCAGCACAACCACTTCATCGACACTTCAATGATTCAATCCCATGATGCTGCCACCGTGCCTCCATTAATAATCTCATCCTCTTCGGCTGAGCATTTTCCTTGTTCGTGTCCTCTTTCACTTGGAACCTTTTAG 348 0.4454 MSSTAVFWCVRVRSEDDTVDEYAYQTSVNIGGRMFSGVLYDQGPETERFYYNNVAQSSKGPLNLIHHPPHDHQHNHFIDTSMIQSHDAATVPPLIISSSSAEHFPCSCPLSLGTF 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1398 115 Pfam Domain of unknown function (DUF702) 2 45 - -
Lele46g1398 115 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 76 IPR007818 GO:0003700|GO:0006355
Lele46g1398 115 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 2 44 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1398 Lele-ChrLele46 20824056 20824403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1398 1 69 C2H2 Transcription Factor Family AT5G66350 56.522 4.41e-16 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lele46g1398 DUF702 1.9e-15 No_clan