Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1397 ATGGATCTTTTCCGGTCGGAGCCGATGCAGCTCGTTCAGCTCATCATTCCTATGGAGTCCGCTCACCTTACTGTCTCCTACCTCGGGGATCTAGGTCTTCTTCAGTTCAAAGATCTCAATGTTGAGAAGAGCCCGTTTCAACGGACTTATGCAAGTCAGCTAAAAAGATGTGGAGAGATGGCACGGAAATTGCGATTTTTCAAGGAGCAAATGTTGAAGGCTGCTGTTTCACCTACAACCGTTGCTACTCAAGTGGACGTGAACATAGATGATTTAGAGGTAAAACTTGCTGACCTTGAGGCAGAGTTAATTGAGATGAATGCGAATGGTGAAAAGTTGCAACGTTCTTACAATGAACTTGTGGAATATAAGCTCGTTCTTCAGAAGTCTGGCGAGTTTTTCCATTCAGCTCAGAATCGTGCCTTGGAGCAGCAGAGAGAACTTGAATCACGTCAGAGTGGAGAATCTATGGAAACAGCATTATTACAAGATCAGGAAATGTCAACAGACTCAAAGCAAGTGAAGTTGGGTTTTCTAGCTGGTCTTGTTCCCAGGGAAAGATCCATGGCATTTGAGAGAATTTTATTTCGTGCTACTAGGGGCAATGTGTTTCTAAGGCAAGTCGTTGTTGAGGATCCTGTCACTGACCCTGTTTCTGGAGAAAAGGTTGAGAAAAATGTATTTTTAGTCTTCTATGCTGGTGAAAGAGCAAAAGCAAAGATTCTGAAAATATGTGAAGCCTTTGGGGCTAATCGTTATCCTTTTGCTGAGGAATCAGGAAAACAAGATCAAATGATTGCAGAGGTTTCAGCAAGACTCTCAGAGTTGAAGACTACTATAGATGCTGGACTGCTGCACCAGGGTAACTTGCTACAGACTATTGGGGCTCAATTTAATCTGTGGAATCTTTTGGTGAGAAAGGAGAAATCCGTATATCATACCCTGAACATGCTTAGCCTTGATGTGACCAAAAAATGCCTTGTGGCTGAGGGTTGGAGTCCTGTTTTTGCAACAAAGAAGATACAGGATGCCTTGGAACGCGCAGCATTTGACTCTAACTCCCAAGTTGGTACCATTTTCCAAGTTTTGCATACTAGGGAGCCACCGCCCACCTATTTCCGGACAAATAAATTCACTTCTTCATTTCAGTCCATTGTTGATGCATACGGGGTGTCTAAGTATCAGGAGGCAAATCCTGCTGTATTTACCATAATTACCTTTCCATTTCTTTTTGCGGTAATGTTTGGTGATTGGGGGCATGGAATATGTTTACTACTGGCAACTTTGTATTTAATAATGAGGGAGAAAAAGTTTTCTAGCCAGAAGCTTGGAGATATTATGGAAATGACTTTTGGAGGTCGTTATGTTATTTTTATGATGGCCCTCTTCTCAATCTTCACTGGTCTGATCTATAATGAGTTCTTCTCTGTCCCATTTGAACTCTTTGGTCCCTCAGCATATGCATGCCGTGACTTTTCTTGCAGAGATGCAACTACTGAAGGTTTGATAAAATTACGTCGCACATACCCATTTGGAGTGGACCCTGTATGGCATGGTTCAAGAAGTGAATTGCCATTCCTGAATTCATTGAAAATGAAAATGTCAATTCTTCTTGGGGTGGCTCAAATGAACCTTGGAATTGTAATAAGCTATTTCAATGCCAAATTCTTTGGTAATGGCCTGAATGTATGGTTCCAATTTCTTCCCCAGATTATATTTCTCAACTGTTTGTTTGGTTACTTATCCGTCCTCGTCATTGTGAAGTGGTGCACTGGTTCACAGGCTGATTTGTACCATGTAATGATCTACATGTTTTTGAGTCCTACAGATGATTTGGGAGAAAACCAGCTCTTTCCTGGTCAGAAAACTTTACAGATTGTACTGCTACTTCTAGCCCTCGTCTCTGTGCCCTGGATGTTGATACCAAAACCTTTTCTTTTGAAGAAGCAACACAATGATAGGCACCAGGGTGAATCCTATGCACCACTTCAAAGCACAGAGGAGAGCTTGCTAGTGGAGTCAAATCATGATTCCCATGGTCATGAGGAATTTGAGTTCAGTGAAGTCTTTGTCCATCAACTCATACATACCATTGAATTTGTACTTGGAGCAGTGTCTAATACAGCTTCTTACCTTCGTCTATGGGCCCTTAGCCTTGCGCATTCGGAGTTGTCAAGTGTTTTCTATGACAAGGTCCTTCTTCTTGCATGGGGGTACAACAACGTGATCATTCTGATAGTGGGTTTCATTGTGTTTGCTTTTGCAACTGTGGGGGTGTTGCTTGTGATGGAAACCCTCAGCGCCTTCCTCCATGCTCTGCGTCTTCACTGGGTGGAGTTCCAAAATAAGTTCTACGAGGGAGATGGTTACTTGTTCCATCCCTACTCGTTTGCGTTGCTAGATGACGAAGATGATTGA 2418 0.4251 MDLFRSEPMQLVQLIIPMESAHLTVSYLGDLGLLQFKDLNVEKSPFQRTYASQLKRCGEMARKLRFFKEQMLKAAVSPTTVATQVDVNIDDLEVKLADLEAELIEMNANGEKLQRSYNELVEYKLVLQKSGEFFHSAQNRALEQQRELESRQSGESMETALLQDQEMSTDSKQVKLGFLAGLVPRERSMAFERILFRATRGNVFLRQVVVEDPVTDPVSGEKVEKNVFLVFYAGERAKAKILKICEAFGANRYPFAEESGKQDQMIAEVSARLSELKTTIDAGLLHQGNLLQTIGAQFNLWNLLVRKEKSVYHTLNMLSLDVTKKCLVAEGWSPVFATKKIQDALERAAFDSNSQVGTIFQVLHTREPPPTYFRTNKFTSSFQSIVDAYGVSKYQEANPAVFTIITFPFLFAVMFGDWGHGICLLLATLYLIMREKKFSSQKLGDIMEMTFGGRYVIFMMALFSIFTGLIYNEFFSVPFELFGPSAYACRDFSCRDATTEGLIKLRRTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIVISYFNAKFFGNGLNVWFQFLPQIIFLNCLFGYLSVLVIVKWCTGSQADLYHVMIYMFLSPTDDLGENQLFPGQKTLQIVLLLLALVSVPWMLIPKPFLLKKQHNDRHQGESYAPLQSTEESLLVESNHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAWGYNNVIILIVGFIVFAFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYLFHPYSFALLDDEDD 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1397 805 Coils Coil 82 116 - -
Lele46g1397 805 PIRSF ATP6V0A1 1 805 IPR026028 GO:0000220|GO:0046961
Lele46g1397 805 Pfam V-type ATPase 116kDa subunit family 27 797 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lele46g1397 805 PANTHER VACUOLAR PROTON ATPASES 3 802 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1397 Lele-ChrLele46 20810128 20818064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1397 1 805 Primary Pumps ATPases(2) AT4G39080 78.342 0.0 1318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele46g1397 46 20810128 20818064 Lele47g0107 47 798374 806320 hybridization
Lele46g1397 46 20810128 20818064 Lele48g0114 48 1525685 1530756 hybridization