Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1394 ATGGCCAGGCCTAGAGCTCAAAGCCGAACCCTTGATTCTTACACAGTCAAACACATAAACAAAACCATTAACGCTGGCGACTGCGTGCTTATGCGGCCGTCCGACCCGTCAAATCCGTCCTATGTGGCTAGGATTGAGCGGATCGAAGCTGACTCGCGTGGCGCCAACGTGAAGGTCCACGTCCGGTGGTATTACCGGCCGGAGGAGTCAATCGGCGGCCGGAGGCAGTTTTACGGCTCTAAGGAGGTCTTCCTTTCTGATCATTTTGATGTTCAGAGTGCCGATACGATCGAAGGAAAGTGTAAGGTTCACAGTTTCAAGAGCTACACGAAACTTGAAGCTGTTGGAAACGAGGATTTCTTCTGTCGCTTCGAATACAATTCCGCCACCGGTGCTTTCAATCCTGATAGAGTGGCTGTGTACTGCAAATGTGAGATGCCCTACAACCCTGATGACCTAATGGTCCAGTGTGAGAGTTGCAGTGATTGGTTTCATCCTACTTGTATAGATATGACTGTGGAGGAAGCCAAAGGACTTGATCACTTCTTTTGTGAAAACTGCTCTGGCGAAGGTCACCAGAATGCACAAAATTCTCATACTTAA 603 0.4892 MARPRAQSRTLDSYTVKHINKTINAGDCVLMRPSDPSNPSYVARIERIEADSRGANVKVHVRWYYRPEESIGGRRQFYGSKEVFLSDHFDVQSADTIEGKCKVHSFKSYTKLEAVGNEDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCESCSDWFHPTCIDMTVEEAKGLDHFFCENCSGEGHQNAQNSHT 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1394 200 PANTHER OS08G0421900 PROTEIN 5 197 - -
Lele46g1394 200 Pfam BAH domain 22 136 IPR001025 GO:0003682
Lele46g1394 200 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Lele46g1394 200 SMART BAH_4 21 137 IPR001025 GO:0003682
Lele46g1394 200 Gene3D - 3 135 IPR043151 -
Lele46g1394 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 200 IPR013083 -
Lele46g1394 200 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Lele46g1394 200 SMART PHD_3 141 188 IPR001965 -
Lele46g1394 200 Pfam PHD-finger 141 188 IPR019787 -
Lele46g1394 200 SUPERFAMILY FYVE/PHD zinc finger 131 190 IPR011011 -
Lele46g1394 200 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1394 Lele-ChrLele46 20799076 20800806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1394 31 139 Core DNA Replication Machinery Family AT4G14700 28.440 4.34e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele46g1394 BAH 5.8e-23 No_clan