Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1322 ATGGCTCAGCCAACTTCCGACGCCGCCGATCTGAATCAGCAGCCGCAGCAATGGACGCAGCCGCATCAGTATCCCCAACAATGGATGAACATGCAGTATCCTGCTTCGGCTATGGCGATGATGCAGCACCAGATGATGATGTATCCGCCGCATTATATCCCTTACGTTAACCAATATTATCAGCCGCCATACCATCACCCGCACTTGAAACAGCCGCCGCCACAGCCGCAGCACCACCAGCAGAGCTCCAACGATGAGATCAGGACGATCTGGCTCGGTGACCTTCATCATTGGATGGACGAGAACTACCTAAATAGCTGCTTTGCTCACACGGGCGAGGTATATTCAGTGAAGGTTATACGAAATAAGCAAACTGGTCAGTCCGAGGGATATGGATTTGTTGAGTTTTATACACGTGCAACGGCTGATAAAATTTTACAGAGCTACAATGGTACTATGATGCCGAATACAGATCAGACCTTCCGCCTAAATTGGGCTGCTTTCAGTTCGGGTGATAGGCGATCTGATGCTAATTCAGATTACTCTATATTTGTTGGGGACTTGGCTGTAGATGTTACTGATGCTATGCTACAGGAAACCTTTGCAAGCAGATATTCATCTGTTAAGGGAGCAAAAGTTGTCATTGATTCTAGCACTGGCCGTTCAAAAGGTTATGGTTTTGTTAGGTTTGCTGATGAAAATGAGAGATCCAGGGCACTGACTGAAATGAATGGTCAGTATTGTTCAAGTAGGCCAATGCGAATAAGTATTGCAACTCCCAAGAAATCATTCGGACATCAACAACATTACTCTTCACAAGCTGTGGTGTTGGCTAATGGATATTCTTCTAATGGTGCTATGGCCCAAGGTTCCCAGTCTGAAGGGGAGTCTTTTAACACAACTATATTTGTCGGAGGGCTTGATTCTGACGTCAGCGATGAAGATCTCAGACAACCATTTTTGCAATATGGTGAGGTTGTATCTGTGAAGATACCGGTTGGAAAGGGGTGTGGTTTTGTTCAATTTGCTAACAGAATGAATGCAGAGGAGGCAATTCAGGCATTGAATGGGACAGTAATAGGGAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAACAAGCATTGGAGGTCAGATTCCAATGGAGGTCAGCATGGAGGGCAAGGTTATGGTGTAAGGCAGCATCAAGCATGA 1200 0.4625 MAQPTSDAADLNQQPQQWTQPHQYPQQWMNMQYPASAMAMMQHQMMMYPPHYIPYVNQYYQPPYHHPHLKQPPPQPQHHQQSSNDEIRTIWLGDLHHWMDENYLNSCFAHTGEVYSVKVIRNKQTGQSEGYGFVEFYTRATADKILQSYNGTMMPNTDQTFRLNWAAFSSGDRRSDANSDYSIFVGDLAVDVTDAMLQETFASRYSSVKGAKVVIDSSTGRSKGYGFVRFADENERSRALTEMNGQYCSSRPMRISIATPKKSFGHQQHYSSQAVVLANGYSSNGAMAQGSQSEGESFNTTIFVGGLDSDVSDEDLRQPFLQYGEVVSVKIPVGKGCGFVQFANRMNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRSDSNGGQHGGQGYGVRQHQA 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1322 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 260 IPR000504 GO:0003723
Lele46g1322 399 SUPERFAMILY RNA-binding domain, RBD 297 393 IPR035979 GO:0003676
Lele46g1322 399 FunFam Polyadenylate-binding protein RBP47 282 398 - -
Lele46g1322 399 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 77 376 - -
Lele46g1322 399 SMART rrm1_1 182 256 IPR000504 GO:0003723
Lele46g1322 399 SMART rrm1_1 301 368 IPR000504 GO:0003723
Lele46g1322 399 SMART rrm1_1 89 164 IPR000504 GO:0003723
Lele46g1322 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 157 IPR000504 GO:0003723
Lele46g1322 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 365 IPR000504 GO:0003723
Lele46g1322 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 253 IPR000504 GO:0003723
Lele46g1322 399 SUPERFAMILY RNA-binding domain, RBD 164 275 IPR035979 GO:0003676
Lele46g1322 399 Gene3D - 278 399 IPR012677 -
Lele46g1322 399 CDD RRM2_SECp43_like 180 259 - -
Lele46g1322 399 FunFam Polyadenylate-binding protein RBP47B 87 167 - -
Lele46g1322 399 MobiDBLite consensus disorder prediction 371 399 - -
Lele46g1322 399 MobiDBLite consensus disorder prediction 64 84 - -
Lele46g1322 399 CDD RRM1_SECp43_like 89 169 - -
Lele46g1322 399 SUPERFAMILY RNA-binding domain, RBD 60 168 IPR035979 GO:0003676
Lele46g1322 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 168 IPR000504 GO:0003723
Lele46g1322 399 CDD RRM3_NGR1_NAM8_like 299 370 - -
Lele46g1322 399 Gene3D - 87 167 IPR012677 -
Lele46g1322 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 372 IPR000504 GO:0003723
Lele46g1322 399 MobiDBLite consensus disorder prediction 1 21 - -
Lele46g1322 399 Gene3D - 168 274 IPR012677 -
Lele46g1322 399 FunFam Polyadenylate-binding protein RBP47B 169 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1322 Lele-ChrLele46 20363204 20367330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1322 87 369 Eukaryotic Initiation Factors Gene Family AT2G23350 28.028 2.92e-28 115