Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1318 ATGGGGAGACCAAGGTGCTTCTTGGACATTAGCATAGGAGATGAACTGGAAGGCAGGATTGTGGTTGAGCTTTACAACGACGTCGCTCCCAAAACTGCTGAGAATTTCAGGGCTCTCTGTACCGGAGAGAAGGGCTTTGGTCCCAACACTGGCGTGCCCCTCCATTTCAAGGGATCTTGCTTTCACCGTGTTATTAAAGGCTTTATGATCCAAGGAGGAGATATATCTGCTGGTGATGGCACTGGAGGAGAGTCTGTTTACGGCCTGAAGTTTGAAGACGAGAATTTCGAGTTGAAGCATGAAAGGAAAGGGATGCTATCTATGGCCAACGCTGGTCCTGACACGAATGGGTCTCAGTTTTATATCACCACGACCCGAACTTCGCACCTTGATGGCAAGCATGTTGTGTTTGGGAAGGTAGTAAAAGGAATGGGAGTTGTCCGTTCGATCGAGCACGTGACAACTGGGGACAACGACCGCCCCGCTCTAGATGTTAAAATCATGGATTGTGGAGAAATCCCACATGGAGCAGATGATGGAATATCAAATTTCTTCAAAGATGGTGATACTTATCCTGATTGGCCAGCTGACCTTGACGAGAGCCCTAGTGAACTTCAATGGTGGATGAATGCTGTAGATTCCATTAAAGCTTTCGGTAACGAGTACTACAAGAAACAAGACTATAAAATGGCTCTCAGGAAGTATCGGAAGGCTTTACGCTACTTGGATATTTGCTGGGAGAAGGAAGGGATCGATGAAGAGTTGAGTTTAAGTTTGAGAAAAACGAAGTCTCAGGTTTTTACAAACAGCTCTGCTTGTAAACTAAAATTGGGGGATCTCAAAGGAGCATTACTAGATACTGAATTCGCTATGCGTGATGGAGACAACAATGTCAAGGCTTTGTTCCGTCAAGGACAGGCGTACATGGCACTTAATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAGGCATTGGTCTTGGAGCCAAATGACGCTGGAATCAAAAAGGAACTTGCTGCTGCCAGGAGGAAGGTGAGCGTGATCAGGAGAAAAAGGCATATAGCAGGATGTTCCAATAACATTTCTGTTGTGAGGAAGACAAGCTAA 1107 0.4553 MGRPRCFLDISIGDELEGRIVVELYNDVAPKTAENFRALCTGEKGFGPNTGVPLHFKGSCFHRVIKGFMIQGGDISAGDGTGGESVYGLKFEDENFELKHERKGMLSMANAGPDTNGSQFYITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVTTGDNDRPALDVKIMDCGEIPHGADDGISNFFKDGDTYPDWPADLDESPSELQWWMNAVDSIKAFGNEYYKKQDYKMALRKYRKALRYLDICWEKEGIDEELSLSLRKTKSQVFTNSSACKLKLGDLKGALLDTEFAMRDGDNNVKALFRQGQAYMALNDIDAAVESFKKALVLEPNDAGIKKELAAARRKVSVIRRKRHIAGCSNNISVVRKTS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1318 368 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515
Lele46g1318 368 Gene3D Tetratricopeptide repeat domain 212 355 IPR011990 GO:0005515
Lele46g1318 368 Pfam Tetratricopeptide repeat 298 331 IPR001440 GO:0005515
Lele46g1318 368 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Lele46g1318 368 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Lele46g1318 368 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Lele46g1318 368 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Lele46g1318 368 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Lele46g1318 368 SUPERFAMILY TPR-like 208 344 IPR011990 GO:0005515
Lele46g1318 368 SMART tpr_5 298 331 IPR019734 GO:0005515
Lele46g1318 368 SMART tpr_5 212 245 IPR019734 GO:0005515
Lele46g1318 368 SUPERFAMILY Cyclophilin-like 3 175 IPR029000 -
Lele46g1318 368 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Lele46g1318 368 CDD cyclophilin_ABH_like 4 171 - -
Lele46g1318 368 ProSiteProfiles TPR repeat region circular profile. 298 331 - -
Lele46g1318 368 Gene3D - 1 178 IPR029000 -
Lele46g1318 368 FunFam peptidyl-prolyl cis-trans isomerase D 210 355 - -
Lele46g1318 368 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 173 - -
Lele46g1318 368 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Lele46g1318 368 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Lele46g1318 368 FunFam Peptidyl-prolyl cis-trans isomerase D 1 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1318 Lele-ChrLele46 20333001 20336521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1318 18 170 U-box Gene Family AT5G67530 44.156 2.24e-35 134