Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1314 ATGGGTTCGGTTCCTCCAGAACTGAGCTTGGATTTGAGACCCACTTTTGTTCCCAAGACAATCAGTGATTTTCTCTACGAGGTTTCCACGATCGGAAACGCCGCCGACAAGTTGTCGAGGTTCGATGAGTTTCTCAGGAGATTGGAAGAGGAAATGATGAAGATCGACGCTTTTAAGCGTGAGCTTCCTCTGTGCATGCTTCTCTTAAACGATGCAATCTTGAATCTGAAGGATGAATCAGCAAAACTCAGGGCACCTATTTCTCAGCCAGTGCTGGAAGAATTTATTCCCTTGACGAAAGAATGTGATCAGAAAAAGGATGATAAGAAAGAAAAGGAATGCAGAGATAAGAAGAATTGGATGAGTTCTGTTCAGCTCTGGAATACCGATAATCATCCCACTACCAACAATGCTTATCAGCAAAGACAACAACACTATGAATTAGAAAACAAGAAATGCGAAGAGGAAGGACAATCTGTGCCTGAGGATCCATTCCAATCTCGTAGAATCGGTGATAATGGATGCAGGGCGTTCTTGGCTTTTTCAACATACTCTAGTATCCCTGCGACACCAGTGACAACTAAGGAAGAAAAGGAACACTCCATTAATGGGCTCTCTCTTATGACTCCTGGTACTAAAAGTTTGAGGGAAGGTTCTGGTTCAAGTGGATCGAGAAGTAGCTCTAGCAGAGCAGTTTCTTCCTCGAATCCCAGTTCACAGCCAATTATACCCACAGGTCATCAGCCTCAGCCACAGAAGCAAGTTGCCCGGAAACAGAGGAGGTGCTGGTCCCCGGAGCTGCACCGAAGATTTGTCAATGCATTACAGCAACTCGGAGGTTCTCTAGCGGCAACTCCAAAACAAATAAGAGAACTCATGCAGGTTGATGGCCTGACCAATGATGAAGTGAAGAGTCATTTACAAAAATATCGACTTCACACTCGCAGAACACCTACCACAGCTGCTCCTGCTAATCAGTCTGTAGTTCTTGGAGGCTTGTGGATGTCGCCAGATCAGCACAATGAACCCTCCAAGGCTAGCAGTTCTGGGTCTGGGTCTCCTCAAGGTCCCCTGCAGTTAGCAGCATCCGGTGGAGGGATGTCTCGAACCGAAGGCGACAGCATGGAAGACGATGAAGATGATGAGAGCTTGAGCTGGAAAAGTCACATTCACAAACCTGGAAAAGATGTATAG 1194 0.4615 MGSVPPELSLDLRPTFVPKTISDFLYEVSTIGNAADKLSRFDEFLRRLEEEMMKIDAFKRELPLCMLLLNDAILNLKDESAKLRAPISQPVLEEFIPLTKECDQKKDDKKEKECRDKKNWMSSVQLWNTDNHPTTNNAYQQRQQHYELENKKCEEEGQSVPEDPFQSRRIGDNGCRAFLAFSTYSSIPATPVTTKEEKEHSINGLSLMTPGTKSLREGSGSSGSRSSSSRAVSSSNPSSQPIIPTGHQPQPQKQVARKQRRCWSPELHRRFVNALQQLGGSLAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRTPTTAAPANQSVVLGGLWMSPDQHNEPSKASSSGSGSPQGPLQLAASGGGMSRTEGDSMEDDEDDESLSWKSHIHKPGKDV 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1314 397 MobiDBLite consensus disorder prediction 334 397 - -
Lele46g1314 397 SUPERFAMILY Homeodomain-like 256 316 IPR009057 -
Lele46g1314 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 257 315 IPR017930 -
Lele46g1314 397 MobiDBLite consensus disorder prediction 191 261 - -
Lele46g1314 397 MobiDBLite consensus disorder prediction 205 257 - -
Lele46g1314 397 MobiDBLite consensus disorder prediction 382 397 - -
Lele46g1314 397 Gene3D - 257 315 - -
Lele46g1314 397 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 258 313 IPR006447 GO:0003677
Lele46g1314 397 Coils Coil 136 156 - -
Lele46g1314 397 MobiDBLite consensus disorder prediction 340 358 - -
Lele46g1314 397 Coils Coil 41 61 - -
Lele46g1314 397 Pfam Myb-like DNA-binding domain 260 311 IPR001005 -
Lele46g1314 397 FunFam Myb family transcription factor 257 315 - -
Lele46g1314 397 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 386 IPR044787 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1314 Lele-ChrLele46 20307383 20309334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1314 7 338 G2-like Transcription Factor Family AT2G03500 39.031 2.29e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele46g1314 Myb_DNA-binding 8.3e-07 CL0123