Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1282 ATGGACGACTATTTGAGCAGCGATGAAGATTATCATTACTCCGATCAGGGCTCCGTCGAAGGCTTCGAAAACGACGAGACCGATATTCAGTTGGTCACTCCCAAGGGCCCCACAACTCTGGTGATTACAAGGGAATCACTTCTAGCCGCACAGAAAGAAGATTTGCGCCGAGTAATGGAAATGCTATCACTACGAGAGCACCATGCACGTACTCTGCTTATATATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTGTATGTAGACAAGGGAAAAGCTGCCTTGTTTGCTGAAGCTGGTGTTAGTGTGGATGAACAGTGTGATCCTGACCCATCAGTTCCTTCTACTGTCACGTGCGAAATCTGCATAGAGGACGTTCCCAGTCATGAAGCGACAAGAATGGACTGCGGGCACTGTTTTTGCAACAGCTGTTGGACGGCACACTTTATTGTCAAGATAAATGAGGGTCAAAGTAGACGTATAAGGTGCATGGCTCACAAATGTAACGCTATTTGTGATGAAGCTATTGTGAGAAATCTAGTCAGTAAAGAGAACCCTAATATGGCTGAGAAATTTGATCGTTTTCTTCTTGAATCCTACATTGAAGACAATAAAAGAGTCAAATGGTGTCCCAGCATCCCTCATTGTGGGAATGCAATACGTGTTGAGGATGATGAATTATGTGAGGTAGAATGTTCATGTGGTCTACAGTTCTGTTTTAGTTGCTTGTCAGAGACGCATTCCCCATGTTCTTGTTTGATGTGGGAGCTCTGGGCTAAGAAGTGCCGAGACGAATCAGAAACTGTTAATTGGATTGCAGTCCATACAAAACCTTGTCCAAAATGCCACAAACCAGTGGAGAAGAATGGCGGTTGCAACTTGGTTAGCTGTATTTGTGGTCAAGCATTTTGTTGGCTTTGTGGTGGAGCTACTGGGCGAGAACATACTTGGTCAAGTATAGCGGGTCATAGCTGTGGTCGCTACAAACAGATAGAGAAAACAGCTGAGCGGGCGAAGCGAGATCTATATCGATACATGCATTATCATAATCGCTATAAAGCTCACACAGACTCCTTTAAACTTGAAAGTAAATTGAAAGAGACTATACAAGTAAAGGTTGCTGTTTCAGAGGAGAGGGATTCTACGCTCAGGGATTATAGTTGGGTAAATAATGGACTCTCCAGACTTTTCAGATCTAGGCGTGTCCTATCATATTCATATCCATTTGCATTTTATATGTTTGGAGATGAGCTATTTAAGGATGAAATGTCAGAAGAGCAGAGGGAAATAAAACAGCACTTATTTGAGGATCAACAGCAACAGCTCGAGGCTAATGTTGAAAAGCTTTCCAAAATTCTGGAGGAACCCTTTGACCAGTTTACAGATGACAAAGTTATGGAGATAAGGATTCAAGTCATTAACCTGTCAAACATTATCGACAATCTGTGCCAGAAAATGTATGAGTGCATTGAGAATGATTTATTGGGTTCTCTTCAACTGGGCATTCACAGTATTGCTCCATACAAGTCAAAAGGCATAGAGAGGGCATCAGAACTTTCAACTTGTTGGAACTATAAAGCCAATAACGCTGGTGGAACAGCTGAACTTGATCGGCCCTCTGGGTCTGGGAGTTCGGATGATAGTGGATGTCCTTCTCACAAGCGTGCTAGGAAAGAAGGTGCTGGTGGTGTCCTTTTTGACCTAAACTTGCCAGCGGAGGAATCAATCATTTTGAATGTCCCGCAACTAGTTTACTTTGCTTTATATCTTACTTTTGGTTTCTTTTTGCCTCTTCTTTCTGTGGATGGCTCTGGTATTGCTGAAATTTTGAATTTAATGACCCAAGATAGTTGCCTGGTTCTTCCTTGTCTTGAAAAAGCTTCATTGACCGAATCATGTCATGTGCAATGCATTCTCTTGTTCACTTCCACTGTCTTTACCTTGCCTTATGAGCATATACAGACTAATGGAATTACATACGAGTCATGTACGGAGTTTCAGTTTATTGGTGCAGAAGATTATCGGTCTCATTCTGCAAAGAGTGTGCAGATCGATCCGTTTATGATGAGACGTACTTGTAGGCTTTGTTACCGTCTCTTTCTTAGGCCTACTGTGTTAGCTAAAATTTCAAATACTTTAGTTCTAACTAGTTGTGCTGATTGTGCCTGA 2169 0.4223 MDDYLSSDEDYHYSDQGSVEGFENDETDIQLVTPKGPTTLVITRESLLAAQKEDLRRVMEMLSLREHHARTLLIYHRWDVEKLFAVYVDKGKAALFAEAGVSVDEQCDPDPSVPSTVTCEICIEDVPSHEATRMDCGHCFCNSCWTAHFIVKINEGQSRRIRCMAHKCNAICDEAIVRNLVSKENPNMAEKFDRFLLESYIEDNKRVKWCPSIPHCGNAIRVEDDELCEVECSCGLQFCFSCLSETHSPCSCLMWELWAKKCRDESETVNWIAVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKQIEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQVKVAVSEERDSTLRDYSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMSEEQREIKQHLFEDQQQQLEANVEKLSKILEEPFDQFTDDKVMEIRIQVINLSNIIDNLCQKMYECIENDLLGSLQLGIHSIAPYKSKGIERASELSTCWNYKANNAGGTAELDRPSGSGSSDDSGCPSHKRARKEGAGGVLFDLNLPAEESIILNVPQLVYFALYLTFGFFLPLLSVDGSGIAEILNLMTQDSCLVLPCLEKASLTESCHVQCILLFTSTVFTLPYEHIQTNGITYESCTEFQFIGAEDYRSHSAKSVQIDPFMMRRTCRLCYRLFLRPTVLAKISNTLVLTSCADCA 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1282 722 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 54 402 IPR031127 GO:0004842|GO:0016567
Lele46g1282 722 Pfam Ariadne domain 331 573 IPR045840 -
Lele46g1282 722 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 203 IPR013083 -
Lele46g1282 722 MobiDBLite consensus disorder prediction 534 555 - -
Lele46g1282 722 SUPERFAMILY RING/U-box 115 202 - -
Lele46g1282 722 SMART ibrneu5 190 252 IPR002867 -
Lele46g1282 722 SMART ibrneu5 260 325 IPR002867 -
Lele46g1282 722 FunFam RBR-type E3 ubiquitin transferase 248 495 - -
Lele46g1282 722 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Lele46g1282 722 Gene3D - 248 495 - -
Lele46g1282 722 Pfam IBR domain, a half RING-finger domain 190 252 IPR002867 -
Lele46g1282 722 FunFam RBR-type E3 ubiquitin transferase 114 204 - -
Lele46g1282 722 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Lele46g1282 722 SUPERFAMILY RING/U-box 190 258 - -
Lele46g1282 722 MobiDBLite consensus disorder prediction 1 26 - -
Lele46g1282 722 SUPERFAMILY RING/U-box 260 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1282 Lele-ChrLele46 20108852 20114049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1282 59 526 ARIADNE family AT2G16090 75.424 0.0 753