Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1264 ATGATGGATACCCCTAATAGATCTACATCAACTGGGTCTTCAGATTCAGCAGAACAGAAGGACAAAGATATAACTTATTCAAATTCAAATGCTATCCTGCCTCCATGTCCTTTAAACCATCAACCTTCTAGTTACTTGGATGGCCCGGTGGCTATACTTTGGGATATCGAAAGTTGTCCTGTTCCGAGTGATGTGCGCCCTGTTGATGTTGCTCGGAATGTAACAATGGCTTTGCAGGTGCATCCAATAATTAAAGGAGCTGTTGTGATGTTTTCTGCTTATGGGGATTTCAATAATTTCCCCAGGCGGCTCAGAGAGGGTTGCCAAAGAACTGGTGTTAAACTCACTGATGTTCCCAGTGGGAGAAAAAATCCTGCTGATAAGGCTATCTTGGCTGACATGTTCTTGTTTGCACTTGACAACAGACCACCTTCTTCTATAATGCTGATATCCGGCGATGTTGATTTTGCTCCTGCACTTTATGTTCTCGGTCAACGTGGATATACTATCATTCTTGTCGTCCCTGCCGGGGTGGGTATGTCAACTTCCTTTGGCAGTGCTGGTAAATTTGTCTGGGACTGGCCTAGCATTGCTCGTGGAGAAGGTTTTGTGCCTCCCTCGAAGGCTCTAGTGCCACCTCATGTTGTTCCTACCGAGGCTGTTGCAGATCTGATAGGGTGCCATATCAATGGCAACTTTGATGGACAAAATGAAGAGGAAGCTATTGTTTATGGAGGGATCTCACAGAACTCCCATAACTCCAAGTGTTGCTCATTTGTGTCACAATCTGTGTCTGAATACAAAAGTGATACATCGAATGCATCATGCTTTCCGACGGCTCTGAGGGCAAATAGCCTTCCATCCACTCAGAACAATGTTTCAGGAGTATCATCTATGTCTTCTTCTGGTGACCATGGGGATCTGAATGGTGTGAAGTGTCAGCTGGTAAAGTTGCTTGAACTTTCTGGAGGTTGTTTGCTTCTGGCTCATGTTCTACCAGAGTATCAGAAATATTTTGGTAGGTCTCTCTCTCCATCTAAATATGGGGTACGCAAATTAGCGAGTCTTTTCAAGAAAATGGGTGATCCATTTTCTGTGGAAGGGAAAGGGCCTCGGATATTTGTATATCTCCGAAACCGGCTAGTGTGCCCTTTGTCTCAGGCAAGCAATGATAAGAAAGGAAAAGGGATTCAGGAAGAGAATGAAGAAATTTCCCATGCTGGTTTCTCTGTAGATGTAGAAAGAATAGTCACAGAAGAACATGATGAGAAAAGCAGCATAGAAAAGGTTCACCAAGGGAAAGCAGCCAGAAGTGAAATTCATGACCAAATTCTCGAGCAATTCAAGCATGAGCTGCAAGAGATTCTCGTAATATATTCTTGCCCAATATTCATAGATTGTTTCGATGACATTTACCAGCTACGATACAAGAAGCCACTGGAATACCAGAGACTGGGCGTGGACAAGTTAGAGGAATTGTTTGTGAAAGTGAGTGATGTGGTAGCACTGCATGAAGAACCAGTAAGCAAGAGGAAGTTCCTGGCGGCTGTGGATGGTTAG 1560 0.4397 MMDTPNRSTSTGSSDSAEQKDKDITYSNSNAILPPCPLNHQPSSYLDGPVAILWDIESCPVPSDVRPVDVARNVTMALQVHPIIKGAVVMFSAYGDFNNFPRRLREGCQRTGVKLTDVPSGRKNPADKAILADMFLFALDNRPPSSIMLISGDVDFAPALYVLGQRGYTIILVVPAGVGMSTSFGSAGKFVWDWPSIARGEGFVPPSKALVPPHVVPTEAVADLIGCHINGNFDGQNEEEAIVYGGISQNSHNSKCCSFVSQSVSEYKSDTSNASCFPTALRANSLPSTQNNVSGVSSMSSSGDHGDLNGVKCQLVKLLELSGGCLLLAHVLPEYQKYFGRSLSPSKYGVRKLASLFKKMGDPFSVEGKGPRIFVYLRNRLVCPLSQASNDKKGKGIQEENEEISHAGFSVDVERIVTEEHDEKSSIEKVHQGKAARSEIHDQILEQFKHELQEILVIYSCPIFIDCFDDIYQLRYKKPLEYQRLGVDKLEELFVKVSDVVALHEEPVSKRKFLAAVDG 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1264 519 Pfam NYN domain 49 174 IPR021139 GO:0004540
Lele46g1264 519 CDD LOTUS 308 377 - -
Lele46g1264 519 CDD PIN_limkain_b1_N_like 49 175 - -
Lele46g1264 519 PANTHER LIMKAIN B LKAP 14 346 IPR024768 GO:0005777|GO:0010468|GO:1903231
Lele46g1264 519 ProSiteProfiles OST-type HTH domain profile. 307 379 IPR025605 -
Lele46g1264 519 ProSiteProfiles OST-type HTH domain profile. 444 518 IPR025605 -
Lele46g1264 519 MobiDBLite consensus disorder prediction 1 22 - -
Lele46g1264 519 Pfam OST-HTH/LOTUS domain 444 507 IPR025605 -
Lele46g1264 519 Pfam OST-HTH/LOTUS domain 309 371 IPR025605 -
Lele46g1264 519 MobiDBLite consensus disorder prediction 1 15 - -
Lele46g1264 519 CDD LOTUS 445 507 - -
Lele46g1264 519 Gene3D - 50 192 - -
Lele46g1264 519 Gene3D - 439 511 IPR041966 -
Lele46g1264 519 Gene3D - 307 375 IPR041966 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1264 Lele-ChrLele46 20005207 20006766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1264 43 200 C2H2 Transcription Factor Family AT5G61190 37.975 4.98e-26 110