Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1262 ATGTCAGTGACTTTAGAGCCGTTGGATTTAGGAGTTCAGATTCCACACCCCTTCAGATGCCCCATTTCTCTCGAGCTGATGCGTGAACCCGTTACTATATCCACGGGTCAGACCTATGACCGAACCAGCATCGAGTCTTGGTTCGCCGCCGGCAACACCACCTGCCCCGTCACCAGAGCGAATCTTTCTGATTTCACTCTCATCCCAAACCACACTCTTCGCCGTCTTATCCAACACTGGTGCGTTTCGAATCGCGATTTCGGAGTCAAACGGATCCCGAGTCCGACCCAACCCGCCCGCCCTTCAGTGGTTCGGACGTTGTTGCATCAAGCATCGTCGGAGACGAGCACTTCTCAGTCACGTATCTCTGCGCTACGACGGCTCAGAGGATTCGCTAGTGACTCGGACAAGAATCGTTCTCTCATTGGATCTTATAACGTGCGCGGGATTTTACTCCATATCCTTTTTGATGCCAATTCGGATTGTTTGGAGTTGAAACACGAGTCGCTCGCACTTTTGGTTTGTTTTTCACTTGCCGAATCTGAATGCGTCTCCATCGCATCGGAACCGGAGAGAATAAAGTATTTGTCGCGTTTGATGTTTCATTCCTCCATCGACGTCCGAGTTAACTCGGCCGCACTGATTGAGACCGTCGTGAGCGGGACTCGTTCGCCGGAGCTGCGTGCACAAATCAGCAATGTCGATGAAATCTACGAAGGAGTGGTTGACATCTTGAAGAGTCCGGTTTCGTACCCTTGCGCTCTCAAGATTGGGATCAAGGCCTTGCTCGCTTTGTGCCTGCTGAAACAAACACGACACAAAGCGGTGGCCGTCGGCGCCCCGGAGATCCTCATCGACCGGCTAGCTGATTTCGAGAAATGCGATGCCGAGAGAGCTCTGGTAACGATTGAGTTGCTCTGTCGAATTCCGGAGGGGTTGGCGACATTTGCAGGGCACGCGCTGACGGTACCGCAGCTGGTGAAAACGGTACTGAAGATATCGGACAGGGCGACAGAGCACGCTGCCGGAGCGCTATTTTCTCTTTGCTCAGAATCGGAAGAGTGCCGGAGGGAGGCGGTGGCGGCTCGTGTGTTAACGCCACTGCTATTGGTGGTACAGAGTGATTGTACAGAGAGGGCAAAGAGGAAGGCGCGGATGTTGCTGAAGCTTCTTCGGGATTCGTGGCCACAAGATTGCGTCGGAAACTCTGAAGATTTTGCATGGAGCGAACTCGTAGTACCATTTTGA 1248 0.5296 MSVTLEPLDLGVQIPHPFRCPISLELMREPVTISTGQTYDRTSIESWFAAGNTTCPVTRANLSDFTLIPNHTLRRLIQHWCVSNRDFGVKRIPSPTQPARPSVVRTLLHQASSETSTSQSRISALRRLRGFASDSDKNRSLIGSYNVRGILLHILFDANSDCLELKHESLALLVCFSLAESECVSIASEPERIKYLSRLMFHSSIDVRVNSAALIETVVSGTRSPELRAQISNVDEIYEGVVDILKSPVSYPCALKIGIKALLALCLLKQTRHKAVAVGAPEILIDRLADFEKCDAERALVTIELLCRIPEGLATFAGHALTVPQLVKTVLKISDRATEHAAGALFSLCSESEECRREAVAARVLTPLLLVVQSDCTERAKRKARMLLKLLRDSWPQDCVGNSEDFAWSELVVPF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1262 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Lele46g1262 415 FunFam U-box domain-containing protein 31 13 87 - -
Lele46g1262 415 Gene3D - 89 252 IPR011989 -
Lele46g1262 415 PANTHER WDSAM1 PROTEIN 12 400 IPR045185 GO:0061630
Lele46g1262 415 CDD RING-Ubox_PUB 18 59 IPR045210 -
Lele46g1262 415 SUPERFAMILY RING/U-box 12 86 - -
Lele46g1262 415 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Lele46g1262 415 SUPERFAMILY ARM repeat 103 392 IPR016024 -
Lele46g1262 415 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Lele46g1262 415 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Lele46g1262 415 Gene3D - 254 392 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1262 Lele-ChrLele46 19988207 19989454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1262 1 415 U-box Gene Family AT1G49780 64.218 0.0 514