Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1260 ATGCTTCACAGTGAACATCCCTCTGTTCTCAACCTGAAGAACCTAACGAACGAGCCTATCATCGAACCTGTTGTGGCCGTCGACTTCCCGGCGCCGGAAAATCTTCTCTGGCTTTTGTGTTTACTGTTCAAAGTTCGGCGTCTGCCATCTGGTTCTCTGTTCCAAGGTCGTCATAGCCGCGTTCGTCTCACCTTCGAAATGGCTCAAATGGTTTGCGGTTCTTGTCGTCACCTTCTTTCATATCCACGAGGCACCAGACATGTCAAGTGTTCTTGCTGTCAGACAGTAAACCTTGTGTTAGAAGCTGATCAGGTTGGGCAAGTCAAGTGCGGGTGCTGTGCAGTTCTGCTAATGTACCCATATGGCGCTTCACAAGTTAGGTGTTGCTCCTGCCAGTTTGTGACGAAAATTGAGGAACACAACAAGCGACCGCCATGGTCTGTACTGCAACAGCAAGGGAAATCTACTCCGCCCAGATCAGTTTCTTAG 489 0.4949 MLHSEHPSVLNLKNLTNEPIIEPVVAVDFPAPENLLWLLCLLFKVRRLPSGSLFQGRHSRVRLTFEMAQMVCGSCRHLLSYPRGTRHVKCSCCQTVNLVLEADQVGQVKCGCCAVLLMYPYGASQVRCCSCQFVTKIEEHNKRPPWSVLQQQGKSTPPRSVS 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1260 162 Pfam LSD1 zinc finger 110 134 IPR005735 -
Lele46g1260 162 Pfam LSD1 zinc finger 72 96 IPR005735 -
Lele46g1260 162 PANTHER PROTEIN LSD1 58 153 IPR040319 -
Lele46g1260 162 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 69 99 IPR005735 -
Lele46g1260 162 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 107 136 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1260 Lele-ChrLele46 19981036 19983457 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lele46g1260 zf-LSD1 3.7e-10 No_clan